Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.12■□□□□ 0.49
COL8A1P27658 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.12■□□□□ 0.49
COL8A1P27658 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.12■□□□□ 0.49
COL8A1P27658 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL8A1P27658 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.12■□□□□ 0.49
COL8A1P27658 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.12■□□□□ 0.49
COL8A1P27658 ABCB10P4-201ENST00000566803 2184 ntBASIC18.12■□□□□ 0.49
COL8A1P27658 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
COL8A1P27658 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL8A1P27658 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.12■□□□□ 0.49
COL8A1P27658 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL8A1P27658 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL8A1P27658 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL8A1P27658 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL8A1P27658 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
COL8A1P27658 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.11■□□□□ 0.49
COL8A1P27658 MMP23A-201ENST00000234610 1017 ntBASIC18.11■□□□□ 0.49
COL8A1P27658 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
COL8A1P27658 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL8A1P27658 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL8A1P27658 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.11■□□□□ 0.49
COL8A1P27658 AC110285.5-201ENST00000611501 352 ntBASIC18.11■□□□□ 0.49
COL8A1P27658 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
COL8A1P27658 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.11■□□□□ 0.49
COL8A1P27658 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
COL8A1P27658 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL8A1P27658 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL8A1P27658 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL8A1P27658 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
COL8A1P27658 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL8A1P27658 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.11■□□□□ 0.49
COL8A1P27658 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL8A1P27658 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL8A1P27658 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.1■□□□□ 0.49
COL8A1P27658 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL8A1P27658 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL8A1P27658 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.1■□□□□ 0.49
COL8A1P27658 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
COL8A1P27658 AC005521.1-201ENST00000393351 872 ntBASIC18.1■□□□□ 0.49
COL8A1P27658 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.1■□□□□ 0.49
COL8A1P27658 AC133681.1-201ENST00000465482 601 ntBASIC18.1■□□□□ 0.49
COL8A1P27658 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL8A1P27658 MIR6786-201ENST00000616843 113 ntBASIC18.1■□□□□ 0.49
COL8A1P27658 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL8A1P27658 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
COL8A1P27658 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL8A1P27658 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL8A1P27658 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL8A1P27658 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL8A1P27658 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.09■□□□□ 0.49
COL8A1P27658 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL8A1P27658 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL8A1P27658 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL8A1P27658 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.09■□□□□ 0.49
COL8A1P27658 CDV3P1-201ENST00000471403 739 ntBASIC18.09■□□□□ 0.49
COL8A1P27658 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
COL8A1P27658 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
COL8A1P27658 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL8A1P27658 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.09■□□□□ 0.49
COL8A1P27658 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL8A1P27658 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.09■□□□□ 0.49
COL8A1P27658 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
COL8A1P27658 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.09■□□□□ 0.49
COL8A1P27658 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL8A1P27658 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL8A1P27658 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL8A1P27658 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
COL8A1P27658 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL8A1P27658 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.08■□□□□ 0.49
COL8A1P27658 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL8A1P27658 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL8A1P27658 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL8A1P27658 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL8A1P27658 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL8A1P27658 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL8A1P27658 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.08■□□□□ 0.48
COL8A1P27658 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL8A1P27658 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.08■□□□□ 0.48
COL8A1P27658 KRT18P57-201ENST00000443599 1254 ntBASIC18.08■□□□□ 0.48
COL8A1P27658 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.08■□□□□ 0.48
COL8A1P27658 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
COL8A1P27658 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL8A1P27658 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL8A1P27658 AC026471.5-201ENST00000615068 467 ntBASIC18.08■□□□□ 0.48
COL8A1P27658 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.08■□□□□ 0.48
COL8A1P27658 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
COL8A1P27658 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.08■□□□□ 0.48
COL8A1P27658 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL8A1P27658 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL8A1P27658 AC133561.1-201ENST00000568600 2415 ntBASIC18.08■□□□□ 0.48
COL8A1P27658 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL8A1P27658 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL8A1P27658 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL8A1P27658 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL8A1P27658 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL8A1P27658 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL8A1P27658 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL8A1P27658 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL8A1P27658 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.07■□□□□ 0.48
COL8A1P27658 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms