Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 AC231657.2-201ENST00000624556 255 ntBASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 AC026471.6-201ENST00000622954 1905 ntBASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 AL157384.1-201ENST00000445995 2473 ntBASIC20.25■□□□□ 0.83
PCDHB3Q9Y5E6 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 EEF1DP3-203ENST00000566025 782 ntBASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDHB3Q9Y5E6 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 AC053503.5-201ENST00000601508 636 ntBASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 MYCNOS-205ENST00000641950 531 ntBASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
PCDHB3Q9Y5E6 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 AL121832.2-201ENST00000610979 668 ntBASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 AC079416.2-201ENST00000625035 1193 ntBASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHB3Q9Y5E6 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 AL121603.2-201ENST00000557373 2117 ntBASIC20.21■□□□□ 0.83
PCDHB3Q9Y5E6 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 AC007322.1-201ENST00000426983 750 ntBASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 DUX4L16-201ENST00000555130 1264 ntBASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms