Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 UPK3BP1-201ENST00000428678 509 ntBASIC17.79■□□□□ 0.44
CSMD1Q96PZ7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CSMD1Q96PZ7 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CSMD1Q96PZ7 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.79■□□□□ 0.44
CSMD1Q96PZ7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.79■□□□□ 0.44
CSMD1Q96PZ7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 TERF1P1-201ENST00000311003 1181 ntBASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.78■□□□□ 0.44
CSMD1Q96PZ7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 AC026471.5-201ENST00000615068 467 ntBASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CSMD1Q96PZ7 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.77■□□□□ 0.43
CSMD1Q96PZ7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.77■□□□□ 0.43
CSMD1Q96PZ7 AC133681.1-201ENST00000465482 601 ntBASIC17.77■□□□□ 0.43
CSMD1Q96PZ7 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CSMD1Q96PZ7 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CSMD1Q96PZ7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.77■□□□□ 0.43
CSMD1Q96PZ7 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.77■□□□□ 0.43
CSMD1Q96PZ7 AC005521.1-201ENST00000393351 872 ntBASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.76■□□□□ 0.43
CSMD1Q96PZ7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 AC239809.2-201ENST00000415381 517 ntBASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 OR7E47P-201ENST00000546390 1422 ntBASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 KRT126P-201ENST00000549467 1181 ntBASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.75■□□□□ 0.43
CSMD1Q96PZ7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 AC026396.1-201ENST00000419388 421 ntBASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 KRT18P56-201ENST00000507275 550 ntBASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 LINC00526-201ENST00000581067 1875 ntBASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 LTK-203ENST00000453182 2412 ntTSL 2 BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSMD1Q96PZ7 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms