Protein–RNA interactions for Protein: Q96M89

CCDC138, Coiled-coil domain-containing protein 138, humanhuman

Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC138Q96M89 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC138Q96M89 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 POU5F1P4-201ENST00000413175 1085 ntBASIC20.42■□□□□ 0.86
CCDC138Q96M89 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC138Q96M89 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC138Q96M89 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC138Q96M89 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC138Q96M89 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CCDC138Q96M89 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC138Q96M89 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC138Q96M89 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC138Q96M89 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC138Q96M89 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CCDC138Q96M89 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC138Q96M89 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC138Q96M89 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CCDC138Q96M89 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC138Q96M89 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC138Q96M89 DUX4L2-201ENST00000561772 1275 ntBASIC20.41■□□□□ 0.86
CCDC138Q96M89 AC104187.1-201ENST00000607510 612 ntBASIC20.41■□□□□ 0.86
CCDC138Q96M89 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.41■□□□□ 0.86
CCDC138Q96M89 DUX4L6-201ENST00000626483 1275 ntBASIC20.41■□□□□ 0.86
CCDC138Q96M89 DUX4L1-201ENST00000627662 1275 ntBASIC20.41■□□□□ 0.86
CCDC138Q96M89 DUX4L8-201ENST00000629013 1275 ntBASIC20.41■□□□□ 0.86
CCDC138Q96M89 DUX4L3-201ENST00000630187 1275 ntBASIC20.41■□□□□ 0.86
CCDC138Q96M89 DUX4L7-201ENST00000630678 1275 ntBASIC20.41■□□□□ 0.86
CCDC138Q96M89 DUX4L5-201ENST00000630834 1275 ntBASIC20.41■□□□□ 0.86
CCDC138Q96M89 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC138Q96M89 AP004607.4-201ENST00000530158 1459 ntBASIC20.41■□□□□ 0.86
CCDC138Q96M89 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC138Q96M89 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC138Q96M89 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC138Q96M89 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC138Q96M89 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC138Q96M89 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC138Q96M89 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 AC034268.1-201ENST00000441047 882 ntBASIC20.4■□□□□ 0.86
CCDC138Q96M89 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC138Q96M89 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC138Q96M89 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CCDC138Q96M89 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC138Q96M89 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CCDC138Q96M89 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC138Q96M89 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC138Q96M89 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC138Q96M89 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC138Q96M89 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC138Q96M89 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC138Q96M89 AC061975.6-201ENST00000579045 1553 ntBASIC20.39■□□□□ 0.85
CCDC138Q96M89 AC004854.2-201ENST00000608450 1441 ntBASIC20.39■□□□□ 0.85
CCDC138Q96M89 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC138Q96M89 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
CCDC138Q96M89 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.39■□□□□ 0.85
CCDC138Q96M89 AC010141.2-201ENST00000452426 721 ntBASIC20.39■□□□□ 0.85
CCDC138Q96M89 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC138Q96M89 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC138Q96M89 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC138Q96M89 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.39■□□□□ 0.85
CCDC138Q96M89 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC138Q96M89 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CCDC138Q96M89 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.39■□□□□ 0.85
CCDC138Q96M89 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC138Q96M89 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC138Q96M89 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CCDC138Q96M89 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
CCDC138Q96M89 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC138Q96M89 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC138Q96M89 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CCDC138Q96M89 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC138Q96M89 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC138Q96M89 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC138Q96M89 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC138Q96M89 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC138Q96M89 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.38■□□□□ 0.85
CCDC138Q96M89 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC138Q96M89 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC138Q96M89 AP001160.3-201ENST00000601484 763 ntBASIC20.38■□□□□ 0.85
CCDC138Q96M89 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CCDC138Q96M89 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC138Q96M89 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms