Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 AL596275.1-201ENST00000423464 877 ntBASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.83■□□□□ 0.93
HDDC3Q8N4P3 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.92
HDDC3Q8N4P3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
HDDC3Q8N4P3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
HDDC3Q8N4P3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HDDC3Q8N4P3 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
HDDC3Q8N4P3 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 ECEL1P1-201ENST00000373592 1742 ntBASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 AC007322.3-201ENST00000426526 701 ntBASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 AC100791.3-201ENST00000617619 330 ntBASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 KRT17P1-201ENST00000399211 1546 ntBASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HDDC3Q8N4P3 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 UNC93B4-201ENST00000505679 747 ntBASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 CYP2T3P-201ENST00000601990 817 ntBASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HDDC3Q8N4P3 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
HDDC3Q8N4P3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms