Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 TRK1YJL129C 3708 nt4.2□□□□□ -1.74
UBP3Q01477 AYT1YLL063C 1425 nt4.2□□□□□ -1.74
UBP3Q01477 MUB1YMR100W 1863 nt4.2□□□□□ -1.74 RIP-Chip
UBP3Q01477 HFM1YGL251C 3564 nt4.19□□□□□ -1.74
UBP3Q01477 MPS1YDL028C 2295 nt4.19□□□□□ -1.74
UBP3Q01477 ROD1YOR018W 2514 nt4.19□□□□□ -1.74
UBP3Q01477 CWH43YCR017C 2862 nt4.19□□□□□ -1.74
UBP3Q01477 YBR259WYBR259W 2067 nt4.19□□□□□ -1.74
UBP3Q01477 NHP2YDL208W 471 nt4.19□□□□□ -1.74
UBP3Q01477 SPG3YDR504C 384 nt4.19□□□□□ -1.74 RIP-Chip
UBP3Q01477 YER097WYER097W 330 nt4.19□□□□□ -1.74
UBP3Q01477 YER137W-AYER137W-A 306 nt4.19□□□□□ -1.74
UBP3Q01477 AAD16YFL057C 459 nt4.19□□□□□ -1.74
UBP3Q01477 YLR269CYLR269C 351 nt4.19□□□□□ -1.74
UBP3Q01477 RPL16BYNL069C 597 nt4.19□□□□□ -1.74
UBP3Q01477 YOR121CYOR121C 306 nt4.19□□□□□ -1.74
UBP3Q01477 FSH3YOR280C 801 nt4.19□□□□□ -1.74
UBP3Q01477 NSL1YPL233W 651 nt4.19□□□□□ -1.74
UBP3Q01477 MAK5YBR142W 2322 nt4.19□□□□□ -1.74
UBP3Q01477 SHS1YDL225W 1656 nt4.19□□□□□ -1.74 RIP-Chip
UBP3Q01477 RED1YLR263W 2484 nt4.18□□□□□ -1.74
UBP3Q01477 GAL11YOL051W 3246 nt4.18□□□□□ -1.74 RIP-Chip
UBP3Q01477 CIN1YOR349W 3045 nt4.18□□□□□ -1.74
UBP3Q01477 KRE5YOR336W 4098 nt4.18□□□□□ -1.74
UBP3Q01477 RPS14AYCR031C 414 nt4.18□□□□□ -1.74
UBP3Q01477 NBL1YHR199C-A 222 nt4.18□□□□□ -1.74
UBP3Q01477 YIL054WYIL054W 318 nt4.18□□□□□ -1.74
UBP3Q01477 YLR076CYLR076C 423 nt4.18□□□□□ -1.74
UBP3Q01477 AIM32YML050W 936 nt4.18□□□□□ -1.74
UBP3Q01477 ATX1YNL259C 222 nt4.18□□□□□ -1.74
UBP3Q01477 GDT1YBR187W 843 nt4.18□□□□□ -1.74
UBP3Q01477 KIN4YOR233W 2403 nt4.18□□□□□ -1.74
UBP3Q01477 CHA4YLR098C 1947 nt4.18□□□□□ -1.74 RIP-Chip
UBP3Q01477 PPQ1YPL179W 1650 nt4.18□□□□□ -1.74
UBP3Q01477 GNT1YOR320C 1476 nt4.18□□□□□ -1.74
UBP3Q01477 YDR061WYDR061W 1620 nt4.17□□□□□ -1.74
UBP3Q01477 MIS1YBR084W 2928 nt4.17□□□□□ -1.74 RIP-Chip
UBP3Q01477 TRX3YCR083W 384 nt4.17□□□□□ -1.74
UBP3Q01477 LSM1YJL124C 519 nt4.17□□□□□ -1.74
UBP3Q01477 UTP11YKL099C 753 nt4.17□□□□□ -1.74
UBP3Q01477 MRPL20YKR085C 588 nt4.17□□□□□ -1.74
UBP3Q01477 RPL15AYLR029C 615 nt4.17□□□□□ -1.74
UBP3Q01477 BFR1YOR198C 1413 nt4.17□□□□□ -1.74 RIP-Chip
UBP3Q01477 MTC4YBR255W 2085 nt4.17□□□□□ -1.74
UBP3Q01477 21S_rRNA21S_rRNA 3296 nt4.17□□□□□ -1.74
UBP3Q01477 LOS1YKL205W 3303 nt4.16□□□□□ -1.74 RIP-Chip
UBP3Q01477 ARO80YDR421W 2853 nt4.16□□□□□ -1.74
UBP3Q01477 YDL176WYDL176W 2127 nt4.16□□□□□ -1.74
UBP3Q01477 SSF1YHR066W 1362 nt4.16□□□□□ -1.74 RIP-Chip
UBP3Q01477 YDR413CYDR413C 576 nt4.16□□□□□ -1.74
UBP3Q01477 YEL057CYEL057C 702 nt4.16□□□□□ -1.74
UBP3Q01477 AIM11YER093C-A 414 nt4.16□□□□□ -1.74
UBP3Q01477 YGR025WYGR025W 303 nt4.16□□□□□ -1.74
UBP3Q01477 YAR029WYAR029W 225 nt4.16□□□□□ -1.74 RIP-Chip
UBP3Q01477 UNG1YML021C 1080 nt4.16□□□□□ -1.74
UBP3Q01477 NOP15YNL110C 663 nt4.16□□□□□ -1.74 RIP-Chip
UBP3Q01477 TGL3YMR313C 1929 nt4.16□□□□□ -1.74 RIP-Chip
UBP3Q01477 RRI2YOL117W 1938 nt4.16□□□□□ -1.74
UBP3Q01477 FMP25YLR077W 1752 nt4.16□□□□□ -1.74
UBP3Q01477 IOC2YLR095C 2439 nt4.16□□□□□ -1.74 RIP-Chip
UBP3Q01477 YLR177WYLR177W 1887 nt4.15□□□□□ -1.74 RIP-Chip
UBP3Q01477 FRE8YLR047C 2061 nt4.15□□□□□ -1.74
UBP3Q01477 RAD4YER162C 2265 nt4.15□□□□□ -1.74
UBP3Q01477 YDR230WYDR230W 348 nt4.15□□□□□ -1.75
UBP3Q01477 SDH7YDR511W 402 nt4.15□□□□□ -1.75
UBP3Q01477 YFR054CYFR054C 579 nt4.15□□□□□ -1.75
UBP3Q01477 PDX1YGR193C 1233 nt4.15□□□□□ -1.75
UBP3Q01477 TEN1YLR010C 483 nt4.15□□□□□ -1.75
UBP3Q01477 PKR1YMR123W 369 nt4.15□□□□□ -1.75
UBP3Q01477 RPS16AYMR143W 432 nt4.15□□□□□ -1.75
UBP3Q01477 BI4Q0120 1917 nt4.15□□□□□ -1.75
UBP3Q01477 RNR1YER070W 2667 nt4.14□□□□□ -1.75
UBP3Q01477 ATG2YNL242W 4779 nt4.14□□□□□ -1.75
UBP3Q01477 RPL11BYGR085C 525 nt4.14□□□□□ -1.75 RIP-Chip
UBP3Q01477 DFG10YIL049W 762 nt4.14□□□□□ -1.75
UBP3Q01477 RPS24BYIL069C 408 nt4.14□□□□□ -1.75
UBP3Q01477 YBL039W-BYBL039W-B 180 nt4.14□□□□□ -1.75
UBP3Q01477 CDC33YOL139C 642 nt4.14□□□□□ -1.75 RIP-Chip
UBP3Q01477 OST2YOR103C 393 nt4.14□□□□□ -1.75
UBP3Q01477 YOR277CYOR277C 309 nt4.14□□□□□ -1.75
UBP3Q01477 RPL11AYPR102C 525 nt4.14□□□□□ -1.75 RIP-Chip
UBP3Q01477 MNL1YHR204W 2391 nt4.14□□□□□ -1.75 RIP-Chip
UBP3Q01477 STI1YOR027W 1770 nt4.14□□□□□ -1.75
UBP3Q01477 GPI17YDR434W 1605 nt4.13□□□□□ -1.75
UBP3Q01477 YBR225WYBR225W 2703 nt4.13□□□□□ -1.75
UBP3Q01477 YDR431WYDR431W 312 nt4.13□□□□□ -1.75
UBP3Q01477 MVB12YGR206W 306 nt4.13□□□□□ -1.75
UBP3Q01477 YHR063W-AYHR063W-A 336 nt4.13□□□□□ -1.75
UBP3Q01477 YJR112W-AYJR112W-A 330 nt4.13□□□□□ -1.75
UBP3Q01477 ATP3YBR039W 936 nt4.13□□□□□ -1.75
UBP3Q01477 YPL142CYPL142C 318 nt4.13□□□□□ -1.75
UBP3Q01477 YPR039WYPR039W 336 nt4.13□□□□□ -1.75
UBP3Q01477 RPB2YOR151C 3675 nt4.13□□□□□ -1.75
UBP3Q01477 GPI10YGL142C 1851 nt4.13□□□□□ -1.75
UBP3Q01477 ABP140YOR239W 1887 nt4.13□□□□□ -1.75
UBP3Q01477 RAD5YLR032W 3510 nt4.13□□□□□ -1.75
UBP3Q01477 RIM13YMR154C 2184 nt4.12□□□□□ -1.75
UBP3Q01477 USA1YML029W 2517 nt4.12□□□□□ -1.75
UBP3Q01477 RTR2YDR066C 591 nt4.12□□□□□ -1.75
UBP3Q01477 EMI1YDR512C 564 nt4.12□□□□□ -1.75
Retrieved 100 of 7,029 protein–RNA pairs in 47.1 ms