Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
LIMK1P53667 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMK1P53667 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMK1P53667 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMK1P53667 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMK1P53667 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
LIMK1P53667 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.57■□□□□ 0.88
LIMK1P53667 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.57■□□□□ 0.88
LIMK1P53667 AC069544.1-201ENST00000609399 999 ntBASIC20.57■□□□□ 0.88
LIMK1P53667 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMK1P53667 GUSBP5-202ENST00000510805 1989 ntBASIC20.57■□□□□ 0.88
LIMK1P53667 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.57■□□□□ 0.88
LIMK1P53667 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMK1P53667 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.56■□□□□ 0.88
LIMK1P53667 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMK1P53667 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMK1P53667 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMK1P53667 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMK1P53667 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMK1P53667 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMK1P53667 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMK1P53667 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.56■□□□□ 0.88
LIMK1P53667 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
LIMK1P53667 AC097493.4-201ENST00000641197 219 ntBASIC20.56■□□□□ 0.88
LIMK1P53667 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMK1P53667 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMK1P53667 AC007375.3-201ENST00000600936 2314 ntBASIC20.56■□□□□ 0.88
LIMK1P53667 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMK1P53667 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMK1P53667 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LIMK1P53667 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMK1P53667 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMK1P53667 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.55■□□□□ 0.88
LIMK1P53667 OR7E47P-201ENST00000546390 1422 ntBASIC20.55■□□□□ 0.88
LIMK1P53667 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
LIMK1P53667 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMK1P53667 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LIMK1P53667 RPS2P55-201ENST00000397318 883 ntBASIC20.55■□□□□ 0.88
LIMK1P53667 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMK1P53667 AC107956.1-201ENST00000494359 873 ntBASIC20.55■□□□□ 0.88
LIMK1P53667 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMK1P53667 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.55■□□□□ 0.88
LIMK1P53667 AC133561.5-201ENST00000635547 218 ntBASIC20.55■□□□□ 0.88
LIMK1P53667 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMK1P53667 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMK1P53667 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.55■□□□□ 0.88
LIMK1P53667 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMK1P53667 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LIMK1P53667 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMK1P53667 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMK1P53667 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMK1P53667 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMK1P53667 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.54■□□□□ 0.88
LIMK1P53667 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMK1P53667 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.54■□□□□ 0.88
LIMK1P53667 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMK1P53667 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMK1P53667 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
LIMK1P53667 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMK1P53667 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.53■□□□□ 0.88
LIMK1P53667 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
LIMK1P53667 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.53■□□□□ 0.88
LIMK1P53667 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 RCN1P1-201ENST00000400413 996 ntBASIC20.53■□□□□ 0.88
LIMK1P53667 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.53■□□□□ 0.88
LIMK1P53667 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.53■□□□□ 0.88
LIMK1P53667 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LIMK1P53667 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
LIMK1P53667 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.53■□□□□ 0.88
LIMK1P53667 AP001412.1-201ENST00000608405 714 ntBASIC20.53■□□□□ 0.88
LIMK1P53667 FAM21FP-204ENST00000608637 956 ntBASIC20.53■□□□□ 0.88
LIMK1P53667 AC012306.2-201ENST00000609350 630 ntBASIC20.53■□□□□ 0.88
LIMK1P53667 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 AC092368.3-202ENST00000574180 1591 ntBASIC20.53■□□□□ 0.88
LIMK1P53667 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
LIMK1P53667 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
LIMK1P53667 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 ANOS2P-203ENST00000472227 1816 ntBASIC20.53■□□□□ 0.88
LIMK1P53667 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMK1P53667 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMK1P53667 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.52■□□□□ 0.88
LIMK1P53667 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.52■□□□□ 0.88
LIMK1P53667 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMK1P53667 AC087499.1-201ENST00000418141 1075 ntBASIC20.52■□□□□ 0.88
LIMK1P53667 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMK1P53667 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.52■□□□□ 0.88
LIMK1P53667 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LIMK1P53667 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LIMK1P53667 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LIMK1P53667 AC233263.1-201ENST00000578059 224 ntBASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms