Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
PRKNO60260 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.32■□□□□ 0.68
PRKNO60260 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.32■□□□□ 0.68
PRKNO60260 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PRKNO60260 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.32■□□□□ 0.68
PRKNO60260 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PRKNO60260 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PRKNO60260 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PRKNO60260 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.31■□□□□ 0.68
PRKNO60260 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.31■□□□□ 0.68
PRKNO60260 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PRKNO60260 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.31■□□□□ 0.68
PRKNO60260 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
PRKNO60260 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.31■□□□□ 0.68
PRKNO60260 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.31■□□□□ 0.68
PRKNO60260 NCF1B-203ENST00000435988 1254 ntBASIC19.31■□□□□ 0.68
PRKNO60260 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PRKNO60260 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.31■□□□□ 0.68
PRKNO60260 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
PRKNO60260 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
PRKNO60260 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.31■□□□□ 0.68
PRKNO60260 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PRKNO60260 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PRKNO60260 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.31■□□□□ 0.68
PRKNO60260 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
PRKNO60260 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PRKNO60260 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PRKNO60260 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
PRKNO60260 CYP2T1P-201ENST00000432607 1285 ntBASIC19.3■□□□□ 0.68
PRKNO60260 CLDN5-201ENST00000403084 2357 ntBASIC19.3■□□□□ 0.68
PRKNO60260 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PRKNO60260 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PRKNO60260 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PRKNO60260 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.3■□□□□ 0.68
PRKNO60260 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PRKNO60260 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PRKNO60260 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
PRKNO60260 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PRKNO60260 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PRKNO60260 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.29■□□□□ 0.68
PRKNO60260 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PRKNO60260 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.29■□□□□ 0.68
PRKNO60260 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PRKNO60260 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PRKNO60260 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PRKNO60260 AC091799.1-201ENST00000422823 811 ntBASIC19.29■□□□□ 0.68
PRKNO60260 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PRKNO60260 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.29■□□□□ 0.68
PRKNO60260 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.29■□□□□ 0.68
PRKNO60260 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
PRKNO60260 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
PRKNO60260 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PRKNO60260 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PRKNO60260 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.28■□□□□ 0.68
PRKNO60260 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PRKNO60260 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PRKNO60260 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PRKNO60260 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.28■□□□□ 0.68
PRKNO60260 AC245052.3-201ENST00000450182 901 ntBASIC19.28■□□□□ 0.68
PRKNO60260 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PRKNO60260 AC104771.1-201ENST00000603335 964 ntBASIC19.28■□□□□ 0.68
PRKNO60260 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
PRKNO60260 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PRKNO60260 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
PRKNO60260 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PRKNO60260 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PRKNO60260 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PRKNO60260 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PRKNO60260 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PRKNO60260 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PRKNO60260 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PRKNO60260 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
PRKNO60260 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.27■□□□□ 0.68
PRKNO60260 AC083906.2-201ENST00000511578 360 ntBASIC19.27■□□□□ 0.68
PRKNO60260 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.27■□□□□ 0.68
PRKNO60260 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.27■□□□□ 0.68
PRKNO60260 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PRKNO60260 AC016405.3-201ENST00000607710 860 ntBASIC19.27■□□□□ 0.68
PRKNO60260 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.27■□□□□ 0.68
PRKNO60260 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PRKNO60260 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
PRKNO60260 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PRKNO60260 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.27■□□□□ 0.67
PRKNO60260 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PRKNO60260 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PRKNO60260 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PRKNO60260 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PRKNO60260 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
PRKNO60260 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.26■□□□□ 0.67
PRKNO60260 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.26■□□□□ 0.67
PRKNO60260 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.26■□□□□ 0.67
PRKNO60260 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.26■□□□□ 0.67
PRKNO60260 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.26■□□□□ 0.67
PRKNO60260 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.26■□□□□ 0.67
PRKNO60260 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PRKNO60260 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.26■□□□□ 0.67
PRKNO60260 GPX1P1-201ENST00000388829 606 ntBASIC19.26■□□□□ 0.67
PRKNO60260 GUSBP6-202ENST00000438529 1198 ntBASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms