Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 NCF1B-203ENST00000435988 1254 ntBASIC20.03■□□□□ 0.8
VPS4AQ9UN37 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4AQ9UN37 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 GPX1P1-201ENST00000388829 606 ntBASIC20.02■□□□□ 0.8
VPS4AQ9UN37 KRT19P1-201ENST00000405746 1186 ntBASIC20.02■□□□□ 0.8
VPS4AQ9UN37 CROCCP5-201ENST00000436658 830 ntBASIC20.02■□□□□ 0.8
VPS4AQ9UN37 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 AC066615.1-201ENST00000640911 628 ntBASIC20.02■□□□□ 0.8
VPS4AQ9UN37 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4AQ9UN37 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
VPS4AQ9UN37 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
VPS4AQ9UN37 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
VPS4AQ9UN37 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 AP006587.3-201ENST00000525742 1516 ntBASIC20.01■□□□□ 0.79
VPS4AQ9UN37 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4AQ9UN37 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20■□□□□ 0.79
VPS4AQ9UN37 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20■□□□□ 0.79
VPS4AQ9UN37 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20■□□□□ 0.79
VPS4AQ9UN37 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VPS4AQ9UN37 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20■□□□□ 0.79
VPS4AQ9UN37 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20■□□□□ 0.79
VPS4AQ9UN37 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20■□□□□ 0.79
VPS4AQ9UN37 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20■□□□□ 0.79
VPS4AQ9UN37 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20■□□□□ 0.79
VPS4AQ9UN37 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
VPS4AQ9UN37 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20■□□□□ 0.79
VPS4AQ9UN37 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
VPS4AQ9UN37 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4AQ9UN37 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
VPS4AQ9UN37 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 KRT18P61-201ENST00000585825 1298 ntBASIC19.99■□□□□ 0.79
VPS4AQ9UN37 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.99■□□□□ 0.79
VPS4AQ9UN37 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS4AQ9UN37 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 345.1 ms