Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 FAM99A-202ENST00000538190 1989 ntBASIC20.9■□□□□ 0.94
HMGB4Q8WW32 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB4Q8WW32 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB4Q8WW32 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB4Q8WW32 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB4Q8WW32 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB4Q8WW32 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB4Q8WW32 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGB4Q8WW32 C9orf163-202ENST00000624034 2573 ntBASIC20.9■□□□□ 0.94
HMGB4Q8WW32 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
HMGB4Q8WW32 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 KRT18P68-201ENST00000392293 1000 ntBASIC20.89■□□□□ 0.93
HMGB4Q8WW32 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 AC008403.3-201ENST00000598924 454 ntBASIC20.89■□□□□ 0.93
HMGB4Q8WW32 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 AC127496.7-201ENST00000625110 1798 ntBASIC20.89■□□□□ 0.93
HMGB4Q8WW32 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB4Q8WW32 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 AC007322.3-201ENST00000426526 701 ntBASIC20.88■□□□□ 0.93
HMGB4Q8WW32 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB4Q8WW32 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 AC133561.1-201ENST00000568600 2415 ntBASIC20.87■□□□□ 0.93
HMGB4Q8WW32 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 PNMA6B-201ENST00000538162 1200 ntBASIC20.87■□□□□ 0.93
HMGB4Q8WW32 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 AC092368.3-202ENST00000574180 1591 ntBASIC20.87■□□□□ 0.93
HMGB4Q8WW32 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB4Q8WW32 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGB4Q8WW32 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 AC008550.1-201ENST00000511500 884 ntBASIC20.85■□□□□ 0.93
HMGB4Q8WW32 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.85■□□□□ 0.93
HMGB4Q8WW32 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms