Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SCUBE3Q8IX30 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.88■■□□□ 1.09
SCUBE3Q8IX30 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SCUBE3Q8IX30 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.88■■□□□ 1.09
SCUBE3Q8IX30 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 AC245052.3-201ENST00000450182 901 ntBASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 TERF1P5-201ENST00000477545 1207 ntBASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 DUX4L16-201ENST00000555130 1264 ntBASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.87■■□□□ 1.09
SCUBE3Q8IX30 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 AC080038.1-201ENST00000611274 1154 ntBASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SCUBE3Q8IX30 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 AC243732.1-201ENST00000612648 864 ntBASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.85■■□□□ 1.09
SCUBE3Q8IX30 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
SCUBE3Q8IX30 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SCUBE3Q8IX30 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SCUBE3Q8IX30 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.83■■□□□ 1.08
SCUBE3Q8IX30 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SCUBE3Q8IX30 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
SCUBE3Q8IX30 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SCUBE3Q8IX30 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SCUBE3Q8IX30 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SCUBE3Q8IX30 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
SCUBE3Q8IX30 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SCUBE3Q8IX30 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.82■■□□□ 1.08
SCUBE3Q8IX30 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SCUBE3Q8IX30 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCUBE3Q8IX30 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCUBE3Q8IX30 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCUBE3Q8IX30 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms