Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SHMT2P34897 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 MFSD11-216ENST00000590393 1141 ntBASIC20.35■□□□□ 0.85
SHMT2P34897 AC011767.1-201ENST00000617410 1153 ntBASIC20.35■□□□□ 0.85
SHMT2P34897 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SHMT2P34897 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.35■□□□□ 0.85
SHMT2P34897 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.35■□□□□ 0.85
SHMT2P34897 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHMT2P34897 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHMT2P34897 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.34■□□□□ 0.85
SHMT2P34897 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHMT2P34897 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHMT2P34897 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.34■□□□□ 0.85
SHMT2P34897 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.34■□□□□ 0.85
SHMT2P34897 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.34■□□□□ 0.85
SHMT2P34897 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.34■□□□□ 0.85
SHMT2P34897 AC080038.1-201ENST00000611274 1154 ntBASIC20.34■□□□□ 0.85
SHMT2P34897 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHMT2P34897 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.34■□□□□ 0.85
SHMT2P34897 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHMT2P34897 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHMT2P34897 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHMT2P34897 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHMT2P34897 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SHMT2P34897 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.34■□□□□ 0.85
SHMT2P34897 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHMT2P34897 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHMT2P34897 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.34■□□□□ 0.85
SHMT2P34897 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHMT2P34897 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHMT2P34897 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.33■□□□□ 0.85
SHMT2P34897 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHMT2P34897 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHMT2P34897 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHMT2P34897 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHMT2P34897 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHMT2P34897 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
SHMT2P34897 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.33■□□□□ 0.85
SHMT2P34897 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.33■□□□□ 0.85
SHMT2P34897 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
SHMT2P34897 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.33■□□□□ 0.84
SHMT2P34897 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SHMT2P34897 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.33■□□□□ 0.84
SHMT2P34897 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.84
SHMT2P34897 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHMT2P34897 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SHMT2P34897 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SHMT2P34897 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.32■□□□□ 0.84
SHMT2P34897 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.32■□□□□ 0.84
SHMT2P34897 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.32■□□□□ 0.84
SHMT2P34897 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SHMT2P34897 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.32■□□□□ 0.84
SHMT2P34897 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.32■□□□□ 0.84
SHMT2P34897 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHMT2P34897 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHMT2P34897 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHMT2P34897 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SHMT2P34897 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SHMT2P34897 AC244015.2-201ENST00000616358 1861 ntBASIC20.31■□□□□ 0.84
SHMT2P34897 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SHMT2P34897 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHMT2P34897 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHMT2P34897 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHMT2P34897 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHMT2P34897 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHMT2P34897 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.31■□□□□ 0.84
SHMT2P34897 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SHMT2P34897 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.31■□□□□ 0.84
SHMT2P34897 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHMT2P34897 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.31■□□□□ 0.84
SHMT2P34897 AC010536.3-201ENST00000620306 533 ntBASIC20.31■□□□□ 0.84
SHMT2P34897 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.31■□□□□ 0.84
SHMT2P34897 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.31■□□□□ 0.84
SHMT2P34897 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SHMT2P34897 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SHMT2P34897 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHMT2P34897 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHMT2P34897 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHMT2P34897 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.3■□□□□ 0.84
SHMT2P34897 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
SHMT2P34897 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHMT2P34897 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHMT2P34897 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHMT2P34897 AL121603.2-201ENST00000557373 2117 ntBASIC20.3■□□□□ 0.84
SHMT2P34897 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms