Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
MSX1P28360 MYCNOS-205ENST00000641950 531 ntBASIC19.04■□□□□ 0.64
MSX1P28360 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.04■□□□□ 0.64
MSX1P28360 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX1P28360 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.04■□□□□ 0.64
MSX1P28360 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MSX1P28360 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
MSX1P28360 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.03■□□□□ 0.64
MSX1P28360 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.03■□□□□ 0.64
MSX1P28360 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSX1P28360 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.03■□□□□ 0.64
MSX1P28360 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.03■□□□□ 0.64
MSX1P28360 AC142086.2-201ENST00000569753 217 ntBASIC19.03■□□□□ 0.64
MSX1P28360 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.03■□□□□ 0.64
MSX1P28360 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
MSX1P28360 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
MSX1P28360 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSX1P28360 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
MSX1P28360 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSX1P28360 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX1P28360 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX1P28360 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX1P28360 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
MSX1P28360 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX1P28360 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.02■□□□□ 0.64
MSX1P28360 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX1P28360 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
MSX1P28360 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
MSX1P28360 AC245052.3-201ENST00000450182 901 ntBASIC19.02■□□□□ 0.64
MSX1P28360 CD99P1-205ENST00000527459 561 ntBASIC19.02■□□□□ 0.64
MSX1P28360 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.02■□□□□ 0.64
MSX1P28360 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.02■□□□□ 0.64
MSX1P28360 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.02■□□□□ 0.64
MSX1P28360 AL121832.2-201ENST00000610979 668 ntBASIC19.02■□□□□ 0.64
MSX1P28360 TMEM191A-211ENST00000637163 1067 ntBASIC19.02■□□□□ 0.64
MSX1P28360 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX1P28360 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
MSX1P28360 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.02■□□□□ 0.63
MSX1P28360 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
MSX1P28360 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
MSX1P28360 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
MSX1P28360 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
MSX1P28360 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.01■□□□□ 0.63
MSX1P28360 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.01■□□□□ 0.63
MSX1P28360 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.01■□□□□ 0.63
MSX1P28360 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.01■□□□□ 0.63
MSX1P28360 AC243732.1-201ENST00000612648 864 ntBASIC19.01■□□□□ 0.63
MSX1P28360 AC231657.2-201ENST00000624556 255 ntBASIC19.01■□□□□ 0.63
MSX1P28360 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
MSX1P28360 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX1P28360 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19■□□□□ 0.63
MSX1P28360 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19■□□□□ 0.63
MSX1P28360 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19■□□□□ 0.63
MSX1P28360 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19■□□□□ 0.63
MSX1P28360 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19■□□□□ 0.63
MSX1P28360 APTR-205ENST00000447009 902 ntTSL 2 BASIC19■□□□□ 0.63
MSX1P28360 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19■□□□□ 0.63
MSX1P28360 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
MSX1P28360 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX1P28360 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX1P28360 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
MSX1P28360 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX1P28360 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX1P28360 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX1P28360 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSX1P28360 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX1P28360 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
MSX1P28360 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSX1P28360 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX1P28360 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.99■□□□□ 0.63
MSX1P28360 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSX1P28360 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.99■□□□□ 0.63
MSX1P28360 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.99■□□□□ 0.63
MSX1P28360 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.99■□□□□ 0.63
MSX1P28360 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.99■□□□□ 0.63
MSX1P28360 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.99■□□□□ 0.63
MSX1P28360 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSX1P28360 AL050303.2-201ENST00000619798 666 ntBASIC18.99■□□□□ 0.63
MSX1P28360 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
MSX1P28360 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX1P28360 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX1P28360 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX1P28360 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX1P28360 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.98■□□□□ 0.63
MSX1P28360 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.98■□□□□ 0.63
MSX1P28360 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms