Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL8A1P27658 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL8A1P27658 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.21■□□□□ 0.51
COL8A1P27658 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.21■□□□□ 0.51
COL8A1P27658 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL8A1P27658 AP001412.1-201ENST00000608405 714 ntBASIC18.21■□□□□ 0.51
COL8A1P27658 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.21■□□□□ 0.51
COL8A1P27658 AL589743.5-201ENST00000616611 1050 ntBASIC18.21■□□□□ 0.51
COL8A1P27658 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.21■□□□□ 0.51
COL8A1P27658 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.21■□□□□ 0.51
COL8A1P27658 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL8A1P27658 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.21■□□□□ 0.51
COL8A1P27658 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.21■□□□□ 0.51
COL8A1P27658 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL8A1P27658 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL8A1P27658 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.2■□□□□ 0.5
COL8A1P27658 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.2■□□□□ 0.5
COL8A1P27658 LINC00526-201ENST00000581067 1875 ntBASIC18.2■□□□□ 0.5
COL8A1P27658 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.2■□□□□ 0.5
COL8A1P27658 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.2■□□□□ 0.5
COL8A1P27658 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL8A1P27658 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.2■□□□□ 0.5
COL8A1P27658 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.2■□□□□ 0.5
COL8A1P27658 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.2■□□□□ 0.5
COL8A1P27658 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.2■□□□□ 0.5
COL8A1P27658 AL034346.1-201ENST00000568244 1277 ntBASIC18.2■□□□□ 0.5
COL8A1P27658 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.2■□□□□ 0.5
COL8A1P27658 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL8A1P27658 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
COL8A1P27658 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL8A1P27658 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL8A1P27658 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL8A1P27658 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL8A1P27658 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL8A1P27658 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
COL8A1P27658 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
COL8A1P27658 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL8A1P27658 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL8A1P27658 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
COL8A1P27658 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL8A1P27658 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL8A1P27658 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL8A1P27658 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL8A1P27658 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.19■□□□□ 0.5
COL8A1P27658 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.19■□□□□ 0.5
COL8A1P27658 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.19■□□□□ 0.5
COL8A1P27658 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.19■□□□□ 0.5
COL8A1P27658 LINC01960-201ENST00000563759 1884 ntBASIC18.19■□□□□ 0.5
COL8A1P27658 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.19■□□□□ 0.5
COL8A1P27658 AC124016.1-201ENST00000609552 612 ntBASIC18.19■□□□□ 0.5
COL8A1P27658 AL353708.3-201ENST00000610272 989 ntBASIC18.19■□□□□ 0.5
COL8A1P27658 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL8A1P27658 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.19■□□□□ 0.5
COL8A1P27658 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC18.19■□□□□ 0.5
COL8A1P27658 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL8A1P27658 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL8A1P27658 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL8A1P27658 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.18■□□□□ 0.5
COL8A1P27658 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL8A1P27658 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
COL8A1P27658 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL8A1P27658 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL8A1P27658 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.18■□□□□ 0.5
COL8A1P27658 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.18■□□□□ 0.5
COL8A1P27658 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
COL8A1P27658 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.18■□□□□ 0.5
COL8A1P27658 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
COL8A1P27658 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.18■□□□□ 0.5
COL8A1P27658 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL8A1P27658 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
COL8A1P27658 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL8A1P27658 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL8A1P27658 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.17■□□□□ 0.5
COL8A1P27658 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL8A1P27658 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL8A1P27658 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
COL8A1P27658 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.17■□□□□ 0.5
COL8A1P27658 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL8A1P27658 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.17■□□□□ 0.5
COL8A1P27658 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.17■□□□□ 0.5
COL8A1P27658 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.17■□□□□ 0.5
COL8A1P27658 MTDHP1-201ENST00000605323 784 ntBASIC18.17■□□□□ 0.5
COL8A1P27658 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL8A1P27658 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL8A1P27658 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL8A1P27658 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
COL8A1P27658 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL8A1P27658 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL8A1P27658 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms