Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 SLC7A5P2-201ENST00000553010 536 ntBASIC20.31■□□□□ 0.84
CDH3P22223 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH3P22223 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.31■□□□□ 0.84
CDH3P22223 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
CDH3P22223 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.31■□□□□ 0.84
CDH3P22223 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH3P22223 AC010542.4-201ENST00000563151 1910 ntBASIC20.31■□□□□ 0.84
CDH3P22223 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH3P22223 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH3P22223 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH3P22223 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CDH3P22223 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CDH3P22223 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 POU5F1P4-201ENST00000413175 1085 ntBASIC20.3■□□□□ 0.84
CDH3P22223 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.3■□□□□ 0.84
CDH3P22223 RAP2CP1-201ENST00000605103 478 ntBASIC20.3■□□□□ 0.84
CDH3P22223 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH3P22223 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CDH3P22223 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH3P22223 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH3P22223 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.29■□□□□ 0.84
CDH3P22223 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.29■□□□□ 0.84
CDH3P22223 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH3P22223 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH3P22223 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.29■□□□□ 0.84
CDH3P22223 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.29■□□□□ 0.84
CDH3P22223 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH3P22223 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.29■□□□□ 0.84
CDH3P22223 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
CDH3P22223 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH3P22223 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH3P22223 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CDH3P22223 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDH3P22223 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDH3P22223 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH3P22223 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH3P22223 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.28■□□□□ 0.84
CDH3P22223 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH3P22223 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH3P22223 AC006970.2-201ENST00000450065 779 ntBASIC20.28■□□□□ 0.84
CDH3P22223 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH3P22223 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH3P22223 DUX4L16-201ENST00000555130 1264 ntBASIC20.28■□□□□ 0.84
CDH3P22223 AC231657.2-201ENST00000624556 255 ntBASIC20.28■□□□□ 0.84
CDH3P22223 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH3P22223 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH3P22223 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.28■□□□□ 0.84
CDH3P22223 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CDH3P22223 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH3P22223 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH3P22223 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH3P22223 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH3P22223 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH3P22223 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH3P22223 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CDH3P22223 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.27■□□□□ 0.84
CDH3P22223 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.27■□□□□ 0.84
CDH3P22223 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH3P22223 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.27■□□□□ 0.84
CDH3P22223 SLC7A5P1-201ENST00000568957 537 ntBASIC20.27■□□□□ 0.84
CDH3P22223 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.27■□□□□ 0.84
CDH3P22223 AC010536.3-201ENST00000620306 533 ntBASIC20.27■□□□□ 0.84
CDH3P22223 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH3P22223 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH3P22223 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH3P22223 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH3P22223 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CDH3P22223 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH3P22223 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH3P22223 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH3P22223 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
CDH3P22223 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH3P22223 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH3P22223 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms