Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FEM1AP1-201ENST00000431297 1995 ntBASIC16.84■□□□□ 0.29
FOXA2Q9Y261 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA2Q9Y261 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 AC006128.1-201ENST00000624704 1661 ntBASIC16.82■□□□□ 0.28
FOXA2Q9Y261 LINC02228-203ENST00000641970 1355 ntBASIC16.82■□□□□ 0.28
FOXA2Q9Y261 AC123595.1-201ENST00000440769 1046 ntBASIC16.82■□□□□ 0.28
FOXA2Q9Y261 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA2Q9Y261 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA2Q9Y261 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 LINC01006-201ENST00000333319 2292 ntBASIC16.8■□□□□ 0.28
FOXA2Q9Y261 PXK-203ENST00000383715 1756 ntTSL 5 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 TPRG1LP1-201ENST00000598702 760 ntBASIC16.8■□□□□ 0.28
FOXA2Q9Y261 AC005224.4-201ENST00000583262 1652 ntBASIC16.8■□□□□ 0.28
FOXA2Q9Y261 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
FOXA2Q9Y261 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms