Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS50Q96JG6 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS50Q96JG6 Z98882.1-201ENST00000622160 2253 ntBASIC20.29■□□□□ 0.84
VPS50Q96JG6 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS50Q96JG6 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS50Q96JG6 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS50Q96JG6 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS50Q96JG6 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.29■□□□□ 0.84
VPS50Q96JG6 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS50Q96JG6 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS50Q96JG6 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS50Q96JG6 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
VPS50Q96JG6 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.28■□□□□ 0.84
VPS50Q96JG6 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS50Q96JG6 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.28■□□□□ 0.84
VPS50Q96JG6 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS50Q96JG6 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.28■□□□□ 0.84
VPS50Q96JG6 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS50Q96JG6 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS50Q96JG6 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
VPS50Q96JG6 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS50Q96JG6 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
VPS50Q96JG6 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS50Q96JG6 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS50Q96JG6 AC009237.3-201ENST00000393279 1427 ntBASIC20.27■□□□□ 0.84
VPS50Q96JG6 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS50Q96JG6 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS50Q96JG6 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS50Q96JG6 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS50Q96JG6 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS50Q96JG6 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS50Q96JG6 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS50Q96JG6 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.27■□□□□ 0.84
VPS50Q96JG6 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.27■□□□□ 0.84
VPS50Q96JG6 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
VPS50Q96JG6 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS50Q96JG6 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS50Q96JG6 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.27■□□□□ 0.83
VPS50Q96JG6 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS50Q96JG6 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
VPS50Q96JG6 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS50Q96JG6 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS50Q96JG6 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 KRT19P1-201ENST00000405746 1186 ntBASIC20.26■□□□□ 0.83
VPS50Q96JG6 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS50Q96JG6 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS50Q96JG6 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS50Q96JG6 AC007952.6-201ENST00000573168 2673 ntBASIC20.26■□□□□ 0.83
VPS50Q96JG6 AC003957.1-201ENST00000625108 2673 ntBASIC20.26■□□□□ 0.83
VPS50Q96JG6 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS50Q96JG6 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS50Q96JG6 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS50Q96JG6 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
VPS50Q96JG6 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
VPS50Q96JG6 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS50Q96JG6 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
VPS50Q96JG6 AC016769.1-201ENST00000409132 1010 ntBASIC20.25■□□□□ 0.83
VPS50Q96JG6 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS50Q96JG6 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS50Q96JG6 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS50Q96JG6 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS50Q96JG6 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS50Q96JG6 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS50Q96JG6 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS50Q96JG6 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS50Q96JG6 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS50Q96JG6 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS50Q96JG6 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS50Q96JG6 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS50Q96JG6 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
VPS50Q96JG6 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS50Q96JG6 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS50Q96JG6 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
VPS50Q96JG6 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS50Q96JG6 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
VPS50Q96JG6 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.24■□□□□ 0.83
VPS50Q96JG6 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS50Q96JG6 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS50Q96JG6 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS50Q96JG6 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS50Q96JG6 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
VPS50Q96JG6 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS50Q96JG6 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS50Q96JG6 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS50Q96JG6 FEM1AP4-201ENST00000443167 1987 ntBASIC20.23■□□□□ 0.83
VPS50Q96JG6 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS50Q96JG6 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS50Q96JG6 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
VPS50Q96JG6 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS50Q96JG6 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms