Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
SMC1BQ8NDV3 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
SMC1BQ8NDV3 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
SMC1BQ8NDV3 AC113347.1-201ENST00000413321 391 ntBASIC24.95■■□□□ 1.58
SMC1BQ8NDV3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC24.95■■□□□ 1.58
SMC1BQ8NDV3 AL355355.2-201ENST00000442321 338 ntBASIC24.95■■□□□ 1.58
SMC1BQ8NDV3 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC24.95■■□□□ 1.58
SMC1BQ8NDV3 AC087388.1-201ENST00000571370 1112 ntBASIC24.95■■□□□ 1.58
SMC1BQ8NDV3 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
SMC1BQ8NDV3 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC24.95■■□□□ 1.58
SMC1BQ8NDV3 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
SMC1BQ8NDV3 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC24.94■■□□□ 1.58
SMC1BQ8NDV3 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SMC1BQ8NDV3 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SMC1BQ8NDV3 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SMC1BQ8NDV3 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC24.94■■□□□ 1.58
SMC1BQ8NDV3 KRT18P57-201ENST00000443599 1254 ntBASIC24.94■■□□□ 1.58
SMC1BQ8NDV3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC24.94■■□□□ 1.58
SMC1BQ8NDV3 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SMC1BQ8NDV3 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC24.94■■□□□ 1.58
SMC1BQ8NDV3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SMC1BQ8NDV3 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 AC091799.1-201ENST00000422823 811 ntBASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 GCK-205ENST00000437084 1385 ntTSL 5 BASIC24.93■■□□□ 1.58
SMC1BQ8NDV3 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
SMC1BQ8NDV3 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC24.92■■□□□ 1.58
SMC1BQ8NDV3 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SMC1BQ8NDV3 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
SMC1BQ8NDV3 AL121894.2-201ENST00000602977 491 ntBASIC24.92■■□□□ 1.58
SMC1BQ8NDV3 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC24.92■■□□□ 1.58
SMC1BQ8NDV3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SMC1BQ8NDV3 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC24.92■■□□□ 1.58
SMC1BQ8NDV3 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
SMC1BQ8NDV3 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
SMC1BQ8NDV3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SMC1BQ8NDV3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
SMC1BQ8NDV3 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SMC1BQ8NDV3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
SMC1BQ8NDV3 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC24.91■■□□□ 1.58
SMC1BQ8NDV3 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC24.91■■□□□ 1.58
SMC1BQ8NDV3 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SMC1BQ8NDV3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
SMC1BQ8NDV3 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC24.91■■□□□ 1.58
SMC1BQ8NDV3 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 AC061975.6-201ENST00000579045 1553 ntBASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.9■■□□□ 1.58
SMC1BQ8NDV3 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC24.89■■□□□ 1.58
SMC1BQ8NDV3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC24.89■■□□□ 1.58
SMC1BQ8NDV3 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SMC1BQ8NDV3 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.58
SMC1BQ8NDV3 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SMC1BQ8NDV3 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SMC1BQ8NDV3 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC24.89■■□□□ 1.58
SMC1BQ8NDV3 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC24.89■■□□□ 1.58
SMC1BQ8NDV3 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
SMC1BQ8NDV3 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
SMC1BQ8NDV3 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
SMC1BQ8NDV3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC24.89■■□□□ 1.57
SMC1BQ8NDV3 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
SMC1BQ8NDV3 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
SMC1BQ8NDV3 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
SMC1BQ8NDV3 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 AC022211.4-201ENST00000625094 2161 ntBASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SMC1BQ8NDV3 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC24.87■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms