Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SRP54P61011 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SRP54P61011 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.57■□□□□ 0.88
SRP54P61011 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.57■□□□□ 0.88
SRP54P61011 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SRP54P61011 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SRP54P61011 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.57■□□□□ 0.88
SRP54P61011 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SRP54P61011 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SRP54P61011 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SRP54P61011 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.56■□□□□ 0.88
SRP54P61011 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SRP54P61011 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.56■□□□□ 0.88
SRP54P61011 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SRP54P61011 AC073210.2-201ENST00000430369 194 ntBASIC20.56■□□□□ 0.88
SRP54P61011 AC245052.3-201ENST00000450182 901 ntBASIC20.56■□□□□ 0.88
SRP54P61011 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.56■□□□□ 0.88
SRP54P61011 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SRP54P61011 CD99P1-205ENST00000527459 561 ntBASIC20.56■□□□□ 0.88
SRP54P61011 MIR4758-201ENST00000577688 71 ntBASIC20.56■□□□□ 0.88
SRP54P61011 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SRP54P61011 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
SRP54P61011 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SRP54P61011 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SRP54P61011 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SRP54P61011 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SRP54P61011 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SRP54P61011 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
SRP54P61011 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.55■□□□□ 0.88
SRP54P61011 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SRP54P61011 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
SRP54P61011 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SRP54P61011 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SRP54P61011 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.55■□□□□ 0.88
SRP54P61011 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SRP54P61011 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.55■□□□□ 0.88
SRP54P61011 RARRES2P4-201ENST00000514074 484 ntBASIC20.55■□□□□ 0.88
SRP54P61011 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.55■□□□□ 0.88
SRP54P61011 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.55■□□□□ 0.88
SRP54P61011 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SRP54P61011 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SRP54P61011 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SRP54P61011 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SRP54P61011 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SRP54P61011 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SRP54P61011 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SRP54P61011 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SRP54P61011 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SRP54P61011 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SRP54P61011 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SRP54P61011 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SRP54P61011 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SRP54P61011 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SRP54P61011 KRT18P6-201ENST00000555540 1265 ntBASIC20.54■□□□□ 0.88
SRP54P61011 AC098934.4-201ENST00000564127 592 ntBASIC20.54■□□□□ 0.88
SRP54P61011 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.54■□□□□ 0.88
SRP54P61011 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
SRP54P61011 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.54■□□□□ 0.88
SRP54P61011 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SRP54P61011 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SRP54P61011 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.54■□□□□ 0.88
SRP54P61011 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.53■□□□□ 0.88
SRP54P61011 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.53■□□□□ 0.88
SRP54P61011 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.53■□□□□ 0.88
SRP54P61011 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
SRP54P61011 AC091799.1-201ENST00000422823 811 ntBASIC20.53■□□□□ 0.88
SRP54P61011 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.53■□□□□ 0.88
SRP54P61011 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.53■□□□□ 0.88
SRP54P61011 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.53■□□□□ 0.88
SRP54P61011 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SRP54P61011 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SRP54P61011 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SRP54P61011 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SRP54P61011 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.52■□□□□ 0.88
SRP54P61011 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SRP54P61011 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SRP54P61011 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SRP54P61011 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.52■□□□□ 0.87
SRP54P61011 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.52■□□□□ 0.87
SRP54P61011 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SRP54P61011 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.52■□□□□ 0.87
SRP54P61011 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms