Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
EPHB3P54753 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.84■■□□□ 1.09
EPHB3P54753 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
EPHB3P54753 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
EPHB3P54753 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.84■■□□□ 1.09
EPHB3P54753 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
EPHB3P54753 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
EPHB3P54753 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
EPHB3P54753 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
EPHB3P54753 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.84■■□□□ 1.09
EPHB3P54753 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
EPHB3P54753 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.84■■□□□ 1.09
EPHB3P54753 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
EPHB3P54753 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.84■■□□□ 1.09
EPHB3P54753 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.84■■□□□ 1.09
EPHB3P54753 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.84■■□□□ 1.09
EPHB3P54753 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.84■■□□□ 1.09
EPHB3P54753 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
EPHB3P54753 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
EPHB3P54753 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
EPHB3P54753 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
EPHB3P54753 KRT18P29-201ENST00000397031 1267 ntBASIC21.83■■□□□ 1.09
EPHB3P54753 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
EPHB3P54753 AC007322.3-201ENST00000426526 701 ntBASIC21.83■■□□□ 1.09
EPHB3P54753 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.83■■□□□ 1.09
EPHB3P54753 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.83■■□□□ 1.09
EPHB3P54753 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.83■■□□□ 1.09
EPHB3P54753 CYP2T3P-201ENST00000601990 817 ntBASIC21.83■■□□□ 1.09
EPHB3P54753 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
EPHB3P54753 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
EPHB3P54753 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
EPHB3P54753 GUSBP5-202ENST00000510805 1989 ntBASIC21.83■■□□□ 1.08
EPHB3P54753 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
EPHB3P54753 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.82■■□□□ 1.08
EPHB3P54753 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.82■■□□□ 1.08
EPHB3P54753 MCRIP2P1-201ENST00000394346 511 ntBASIC21.82■■□□□ 1.08
EPHB3P54753 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.82■■□□□ 1.08
EPHB3P54753 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.82■■□□□ 1.08
EPHB3P54753 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.82■■□□□ 1.08
EPHB3P54753 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.82■■□□□ 1.08
EPHB3P54753 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.82■■□□□ 1.08
EPHB3P54753 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 ITM2C-210ENST00000620962 501 ntBASIC21.82■■□□□ 1.08
EPHB3P54753 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.82■■□□□ 1.08
EPHB3P54753 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EPHB3P54753 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.82■■□□□ 1.08
EPHB3P54753 AC233723.2-201ENST00000623798 2106 ntBASIC21.82■■□□□ 1.08
EPHB3P54753 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
EPHB3P54753 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.81■■□□□ 1.08
EPHB3P54753 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.81■■□□□ 1.08
EPHB3P54753 KRT17P1-201ENST00000399211 1546 ntBASIC21.81■■□□□ 1.08
EPHB3P54753 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
EPHB3P54753 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
EPHB3P54753 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
EPHB3P54753 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
EPHB3P54753 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
EPHB3P54753 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.81■■□□□ 1.08
EPHB3P54753 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.81■■□□□ 1.08
EPHB3P54753 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.81■■□□□ 1.08
EPHB3P54753 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
EPHB3P54753 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.81■■□□□ 1.08
EPHB3P54753 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.81■■□□□ 1.08
EPHB3P54753 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.81■■□□□ 1.08
EPHB3P54753 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
EPHB3P54753 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.81■■□□□ 1.08
EPHB3P54753 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.81■■□□□ 1.08
EPHB3P54753 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
EPHB3P54753 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
EPHB3P54753 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
EPHB3P54753 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
EPHB3P54753 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
EPHB3P54753 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.8■■□□□ 1.08
EPHB3P54753 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.8■■□□□ 1.08
EPHB3P54753 AL589743.5-201ENST00000616611 1050 ntBASIC21.8■■□□□ 1.08
EPHB3P54753 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
EPHB3P54753 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
EPHB3P54753 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
EPHB3P54753 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
EPHB3P54753 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
EPHB3P54753 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
EPHB3P54753 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
EPHB3P54753 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.79■■□□□ 1.08
EPHB3P54753 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
EPHB3P54753 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
EPHB3P54753 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.79■■□□□ 1.08
EPHB3P54753 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.79■■□□□ 1.08
EPHB3P54753 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
EPHB3P54753 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
EPHB3P54753 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
EPHB3P54753 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms