Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK1P53667 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK1P53667 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.69■□□□□ 0.9
LIMK1P53667 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK1P53667 POU5F1P4-201ENST00000413175 1085 ntBASIC20.69■□□□□ 0.9
LIMK1P53667 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMK1P53667 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMK1P53667 AC243732.1-201ENST00000612648 864 ntBASIC20.69■□□□□ 0.9
LIMK1P53667 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK1P53667 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK1P53667 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
LIMK1P53667 RBM17P2-201ENST00000616397 1405 ntBASIC20.69■□□□□ 0.9
LIMK1P53667 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK1P53667 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
LIMK1P53667 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LIMK1P53667 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK1P53667 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK1P53667 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK1P53667 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK1P53667 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
LIMK1P53667 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.68■□□□□ 0.9
LIMK1P53667 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMK1P53667 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK1P53667 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK1P53667 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK1P53667 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMK1P53667 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.68■□□□□ 0.9
LIMK1P53667 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMK1P53667 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.68■□□□□ 0.9
LIMK1P53667 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.68■□□□□ 0.9
LIMK1P53667 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMK1P53667 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
LIMK1P53667 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK1P53667 LINC00526-201ENST00000581067 1875 ntBASIC20.68■□□□□ 0.9
LIMK1P53667 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK1P53667 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK1P53667 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
LIMK1P53667 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
LIMK1P53667 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMK1P53667 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMK1P53667 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMK1P53667 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.67■□□□□ 0.9
LIMK1P53667 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LIMK1P53667 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.67■□□□□ 0.9
LIMK1P53667 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMK1P53667 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMK1P53667 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LIMK1P53667 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMK1P53667 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMK1P53667 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMK1P53667 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMK1P53667 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMK1P53667 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMK1P53667 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMK1P53667 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMK1P53667 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
LIMK1P53667 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.66■□□□□ 0.9
LIMK1P53667 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.66■□□□□ 0.9
LIMK1P53667 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMK1P53667 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMK1P53667 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.66■□□□□ 0.9
LIMK1P53667 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMK1P53667 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMK1P53667 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMK1P53667 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMK1P53667 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.65■□□□□ 0.9
LIMK1P53667 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.65■□□□□ 0.9
LIMK1P53667 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
LIMK1P53667 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
LIMK1P53667 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMK1P53667 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMK1P53667 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
LIMK1P53667 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMK1P53667 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
LIMK1P53667 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LIMK1P53667 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.65■□□□□ 0.9
LIMK1P53667 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMK1P53667 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
LIMK1P53667 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMK1P53667 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
LIMK1P53667 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMK1P53667 KRT16P2-201ENST00000414673 1423 ntBASIC20.64■□□□□ 0.89
LIMK1P53667 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.64■□□□□ 0.89
LIMK1P53667 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIMK1P53667 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.64■□□□□ 0.89
LIMK1P53667 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMK1P53667 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMK1P53667 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMK1P53667 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMK1P53667 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.64■□□□□ 0.89
LIMK1P53667 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.64■□□□□ 0.89
LIMK1P53667 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIMK1P53667 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMK1P53667 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.64■□□□□ 0.89
LIMK1P53667 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMK1P53667 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.64■□□□□ 0.89
LIMK1P53667 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMK1P53667 KRT17P2-201ENST00000300992 1314 ntBASIC20.63■□□□□ 0.89
LIMK1P53667 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMK1P53667 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms