Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CIITAP33076 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC23.59■■□□□ 1.37
CIITAP33076 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CIITAP33076 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.59■■□□□ 1.37
CIITAP33076 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.59■■□□□ 1.37
CIITAP33076 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CIITAP33076 AL591742.1-201ENST00000604433 565 ntBASIC23.59■■□□□ 1.37
CIITAP33076 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.59■■□□□ 1.37
CIITAP33076 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CIITAP33076 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
CIITAP33076 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CIITAP33076 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23.59■■□□□ 1.37
CIITAP33076 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CIITAP33076 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CIITAP33076 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
CIITAP33076 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.58■■□□□ 1.37
CIITAP33076 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC23.58■■□□□ 1.37
CIITAP33076 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CIITAP33076 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
CIITAP33076 MAP2K4P1-201ENST00000438453 1195 ntBASIC23.58■■□□□ 1.37
CIITAP33076 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CIITAP33076 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CIITAP33076 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CIITAP33076 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CIITAP33076 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CIITAP33076 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CIITAP33076 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CIITAP33076 NCF1B-203ENST00000435988 1254 ntBASIC23.57■■□□□ 1.36
CIITAP33076 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CIITAP33076 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CIITAP33076 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
CIITAP33076 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.57■■□□□ 1.36
CIITAP33076 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CIITAP33076 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
CIITAP33076 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CIITAP33076 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.57■■□□□ 1.36
CIITAP33076 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.56■■□□□ 1.36
CIITAP33076 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CIITAP33076 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CIITAP33076 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
CIITAP33076 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.56■■□□□ 1.36
CIITAP33076 AC006970.2-201ENST00000450065 779 ntBASIC23.56■■□□□ 1.36
CIITAP33076 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC23.56■■□□□ 1.36
CIITAP33076 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CIITAP33076 AC133552.2-202ENST00000575694 574 ntBASIC23.56■■□□□ 1.36
CIITAP33076 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CIITAP33076 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.56■■□□□ 1.36
CIITAP33076 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CIITAP33076 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CIITAP33076 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.55■■□□□ 1.36
CIITAP33076 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CIITAP33076 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CIITAP33076 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CIITAP33076 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CIITAP33076 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC23.55■■□□□ 1.36
CIITAP33076 CYP2T1P-201ENST00000432607 1285 ntBASIC23.55■■□□□ 1.36
CIITAP33076 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC23.55■■□□□ 1.36
CIITAP33076 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC23.55■■□□□ 1.36
CIITAP33076 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC23.55■■□□□ 1.36
CIITAP33076 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.55■■□□□ 1.36
CIITAP33076 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC23.55■■□□□ 1.36
CIITAP33076 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CIITAP33076 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CIITAP33076 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.55■■□□□ 1.36
CIITAP33076 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CIITAP33076 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CIITAP33076 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CIITAP33076 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CIITAP33076 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
CIITAP33076 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CIITAP33076 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
CIITAP33076 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.54■■□□□ 1.36
CIITAP33076 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CIITAP33076 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC23.54■■□□□ 1.36
CIITAP33076 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
CIITAP33076 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC23.54■■□□□ 1.36
CIITAP33076 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CIITAP33076 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
CIITAP33076 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC23.54■■□□□ 1.36
CIITAP33076 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CIITAP33076 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC23.54■■□□□ 1.36
CIITAP33076 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
CIITAP33076 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CIITAP33076 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
CIITAP33076 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CIITAP33076 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CIITAP33076 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CIITAP33076 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
CIITAP33076 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC23.53■■□□□ 1.36
CIITAP33076 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.53■■□□□ 1.36
CIITAP33076 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CIITAP33076 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.53■■□□□ 1.36
CIITAP33076 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.53■■□□□ 1.36
CIITAP33076 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC23.53■■□□□ 1.36
CIITAP33076 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CIITAP33076 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CIITAP33076 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
CIITAP33076 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.52■■□□□ 1.36
CIITAP33076 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC23.52■■□□□ 1.36
CIITAP33076 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms