Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
TPM1P09493 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.88■■□□□ 1.25
TPM1P09493 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
TPM1P09493 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC22.88■■□□□ 1.25
TPM1P09493 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
TPM1P09493 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
TPM1P09493 NARF-205ENST00000412079 1760 ntTSL 5 BASIC22.88■■□□□ 1.25
TPM1P09493 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
TPM1P09493 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
TPM1P09493 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
TPM1P09493 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC22.87■■□□□ 1.25
TPM1P09493 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
TPM1P09493 AC136469.2-201ENST00000623944 1028 ntBASIC22.87■■□□□ 1.25
TPM1P09493 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC22.87■■□□□ 1.25
TPM1P09493 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC22.87■■□□□ 1.25
TPM1P09493 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
TPM1P09493 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
TPM1P09493 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
TPM1P09493 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
TPM1P09493 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
TPM1P09493 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC22.86■■□□□ 1.25
TPM1P09493 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC22.86■■□□□ 1.25
TPM1P09493 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.86■■□□□ 1.25
TPM1P09493 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
TPM1P09493 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TPM1P09493 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TPM1P09493 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
TPM1P09493 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC22.86■■□□□ 1.25
TPM1P09493 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC22.86■■□□□ 1.25
TPM1P09493 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
TPM1P09493 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TPM1P09493 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC22.85■■□□□ 1.25
TPM1P09493 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TPM1P09493 STX5-203ENST00000394690 1568 ntTSL 5 BASIC22.85■■□□□ 1.25
TPM1P09493 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
TPM1P09493 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
TPM1P09493 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
TPM1P09493 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
TPM1P09493 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.85■■□□□ 1.25
TPM1P09493 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
TPM1P09493 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
TPM1P09493 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
TPM1P09493 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TPM1P09493 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
TPM1P09493 SERBP1P1-201ENST00000396021 1160 ntBASIC22.85■■□□□ 1.25
TPM1P09493 SLC47A1P1-202ENST00000449666 945 ntBASIC22.85■■□□□ 1.25
TPM1P09493 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.85■■□□□ 1.25
TPM1P09493 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.85■■□□□ 1.25
TPM1P09493 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
TPM1P09493 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TPM1P09493 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TPM1P09493 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
TPM1P09493 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
TPM1P09493 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
TPM1P09493 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
TPM1P09493 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.84■■□□□ 1.25
TPM1P09493 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.84■■□□□ 1.25
TPM1P09493 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.84■■□□□ 1.25
TPM1P09493 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TPM1P09493 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TPM1P09493 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
TPM1P09493 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
TPM1P09493 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
TPM1P09493 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
TPM1P09493 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
TPM1P09493 AP005212.1-201ENST00000581547 1997 ntBASIC22.83■■□□□ 1.25
TPM1P09493 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
TPM1P09493 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
TPM1P09493 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
TPM1P09493 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.83■■□□□ 1.25
TPM1P09493 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
TPM1P09493 AL512631.2-201ENST00000604634 923 ntBASIC22.83■■□□□ 1.25
TPM1P09493 AC011298.3-201ENST00000615796 283 ntBASIC22.83■■□□□ 1.25
TPM1P09493 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
TPM1P09493 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC22.83■■□□□ 1.24
TPM1P09493 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC22.83■■□□□ 1.24
TPM1P09493 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC22.83■■□□□ 1.24
TPM1P09493 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
TPM1P09493 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
TPM1P09493 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
TPM1P09493 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC22.82■■□□□ 1.24
TPM1P09493 PLK5-205ENST00000642079 1969 ntBASIC22.82■■□□□ 1.24
TPM1P09493 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TPM1P09493 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.82■■□□□ 1.24
TPM1P09493 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.82■■□□□ 1.24
TPM1P09493 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.82■■□□□ 1.24
TPM1P09493 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC22.82■■□□□ 1.24
TPM1P09493 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
TPM1P09493 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms