Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDB3O75112 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.63■□□□□ 0.73
LDB3O75112 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
LDB3O75112 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDB3O75112 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LDB3O75112 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LDB3O75112 KRT18P11-201ENST00000435214 1283 ntBASIC19.63■□□□□ 0.73
LDB3O75112 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.63■□□□□ 0.73
LDB3O75112 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.63■□□□□ 0.73
LDB3O75112 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDB3O75112 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
LDB3O75112 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB3O75112 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LDB3O75112 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB3O75112 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB3O75112 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.62■□□□□ 0.73
LDB3O75112 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB3O75112 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.62■□□□□ 0.73
LDB3O75112 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.62■□□□□ 0.73
LDB3O75112 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.62■□□□□ 0.73
LDB3O75112 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB3O75112 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.62■□□□□ 0.73
LDB3O75112 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDB3O75112 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDB3O75112 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.62■□□□□ 0.73
LDB3O75112 AC092666.2-201ENST00000613287 246 ntBASIC19.62■□□□□ 0.73
LDB3O75112 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.62■□□□□ 0.73
LDB3O75112 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB3O75112 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
LDB3O75112 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.62■□□□□ 0.73
LDB3O75112 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LDB3O75112 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.61■□□□□ 0.73
LDB3O75112 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB3O75112 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB3O75112 AC004911.1-201ENST00000416316 871 ntBASIC19.61■□□□□ 0.73
LDB3O75112 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.61■□□□□ 0.73
LDB3O75112 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LDB3O75112 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.61■□□□□ 0.73
LDB3O75112 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
LDB3O75112 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LDB3O75112 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LDB3O75112 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LDB3O75112 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LDB3O75112 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB3O75112 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB3O75112 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDB3O75112 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LDB3O75112 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.6■□□□□ 0.73
LDB3O75112 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
LDB3O75112 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDB3O75112 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.6■□□□□ 0.73
LDB3O75112 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.6■□□□□ 0.73
LDB3O75112 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.6■□□□□ 0.73
LDB3O75112 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.6■□□□□ 0.73
LDB3O75112 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
LDB3O75112 SLC7A5P1-201ENST00000568957 537 ntBASIC19.6■□□□□ 0.73
LDB3O75112 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LDB3O75112 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDB3O75112 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDB3O75112 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LDB3O75112 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
LDB3O75112 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.59■□□□□ 0.73
LDB3O75112 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDB3O75112 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LDB3O75112 MFSD11-216ENST00000590393 1141 ntBASIC19.59■□□□□ 0.73
LDB3O75112 AL137784.2-201ENST00000607332 1000 ntBASIC19.59■□□□□ 0.73
LDB3O75112 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.59■□□□□ 0.73
LDB3O75112 AC011767.1-201ENST00000617410 1153 ntBASIC19.59■□□□□ 0.73
LDB3O75112 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LDB3O75112 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDB3O75112 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDB3O75112 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDB3O75112 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.59■□□□□ 0.73
LDB3O75112 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
LDB3O75112 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDB3O75112 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDB3O75112 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDB3O75112 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.58■□□□□ 0.73
LDB3O75112 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LDB3O75112 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LDB3O75112 AL049796.1-201ENST00000565336 1766 ntBASIC19.58■□□□□ 0.73
LDB3O75112 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
LDB3O75112 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.73
LDB3O75112 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDB3O75112 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LDB3O75112 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LDB3O75112 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LDB3O75112 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDB3O75112 BID-214ENST00000617586 542 ntTSL 5 BASIC19.58■□□□□ 0.72
LDB3O75112 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.58■□□□□ 0.72
LDB3O75112 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
LDB3O75112 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDB3O75112 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDB3O75112 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
LDB3O75112 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDB3O75112 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LDB3O75112 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.58■□□□□ 0.72
LDB3O75112 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.58■□□□□ 0.72
LDB3O75112 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDB3O75112 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms