Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 AC104187.1-201ENST00000607510 612 ntBASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 AC120498.10-201ENST00000621827 505 ntBASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.09■□□□□ 0.65
EXOSC3Q9NQT5 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
EXOSC3Q9NQT5 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
EXOSC3Q9NQT5 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
EXOSC3Q9NQT5 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
EXOSC3Q9NQT5 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 AC097381.1-201ENST00000429019 1296 ntBASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
EXOSC3Q9NQT5 AL121603.2-201ENST00000557373 2117 ntBASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 KRT18P20-201ENST00000548986 1279 ntBASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 AP001160.3-201ENST00000601484 763 ntBASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 MIR6821-201ENST00000617625 74 ntBASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 AC004854.2-201ENST00000608450 1441 ntBASIC19.07■□□□□ 0.64
EXOSC3Q9NQT5 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
EXOSC3Q9NQT5 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
EXOSC3Q9NQT5 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms