Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
UPF3AQ9H1J1 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 PEX7-202ENST00000367756 680 ntTSL 3 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 UBE2SP1-201ENST00000450587 669 ntBASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 RHOD-202ENST00000532559 538 ntTSL 3 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 AL589743.5-201ENST00000616611 1050 ntBASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
UPF3AQ9H1J1 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.36■■□□□ 1.33
UPF3AQ9H1J1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
UPF3AQ9H1J1 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.36■■□□□ 1.33
UPF3AQ9H1J1 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
UPF3AQ9H1J1 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
UPF3AQ9H1J1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
UPF3AQ9H1J1 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
UPF3AQ9H1J1 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.36■■□□□ 1.33
UPF3AQ9H1J1 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC23.36■■□□□ 1.33
UPF3AQ9H1J1 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC23.35■■□□□ 1.33
UPF3AQ9H1J1 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 PNMA6B-201ENST00000538162 1200 ntBASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
UPF3AQ9H1J1 MME-217ENST00000616757 1315 ntTSL 5 BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 RNF121-214ENST00000533380 870 ntTSL 3 BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
UPF3AQ9H1J1 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
UPF3AQ9H1J1 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
UPF3AQ9H1J1 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.32■■□□□ 1.32
UPF3AQ9H1J1 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.31■■□□□ 1.32
UPF3AQ9H1J1 GCK-205ENST00000437084 1385 ntTSL 5 BASIC23.31■■□□□ 1.32
UPF3AQ9H1J1 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3AQ9H1J1 KRT18P68-201ENST00000392293 1000 ntBASIC23.31■■□□□ 1.32
UPF3AQ9H1J1 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC23.31■■□□□ 1.32
UPF3AQ9H1J1 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC23.31■■□□□ 1.32
UPF3AQ9H1J1 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC23.31■■□□□ 1.32
UPF3AQ9H1J1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC23.31■■□□□ 1.32
UPF3AQ9H1J1 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms