Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 ABHD17AP6-201ENST00000458502 1044 ntBASIC28.26■■■□□ 2.11
ABCA3Q99758 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
ABCA3Q99758 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
ABCA3Q99758 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC28.25■■■□□ 2.11
ABCA3Q99758 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
ABCA3Q99758 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
ABCA3Q99758 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC28.25■■■□□ 2.11
ABCA3Q99758 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
ABCA3Q99758 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC28.25■■■□□ 2.11
ABCA3Q99758 AC007322.3-201ENST00000426526 701 ntBASIC28.24■■■□□ 2.11
ABCA3Q99758 AC245052.3-201ENST00000450182 901 ntBASIC28.24■■■□□ 2.11
ABCA3Q99758 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC28.24■■■□□ 2.11
ABCA3Q99758 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC28.24■■■□□ 2.11
ABCA3Q99758 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC28.24■■■□□ 2.11
ABCA3Q99758 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
ABCA3Q99758 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
ABCA3Q99758 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
ABCA3Q99758 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC28.23■■■□□ 2.11
ABCA3Q99758 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
ABCA3Q99758 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC28.23■■■□□ 2.11
ABCA3Q99758 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC28.23■■■□□ 2.11
ABCA3Q99758 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC28.23■■■□□ 2.11
ABCA3Q99758 AL049637.2-201ENST00000641778 930 ntBASIC28.23■■■□□ 2.11
ABCA3Q99758 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
ABCA3Q99758 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
ABCA3Q99758 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC28.23■■■□□ 2.11
ABCA3Q99758 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
ABCA3Q99758 CDV3P1-201ENST00000471403 739 ntBASIC28.23■■■□□ 2.11
ABCA3Q99758 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
ABCA3Q99758 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
ABCA3Q99758 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
ABCA3Q99758 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ABCA3Q99758 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ABCA3Q99758 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ABCA3Q99758 VMO1-204ENST00000441199 741 ntTSL 2 BASIC28.22■■■□□ 2.11
ABCA3Q99758 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC28.22■■■□□ 2.11
ABCA3Q99758 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ABCA3Q99758 AC139530.1-201ENST00000575312 1977 ntBASIC28.22■■■□□ 2.11
ABCA3Q99758 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ABCA3Q99758 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ABCA3Q99758 GCK-205ENST00000437084 1385 ntTSL 5 BASIC28.22■■■□□ 2.11
ABCA3Q99758 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ABCA3Q99758 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
ABCA3Q99758 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
ABCA3Q99758 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC28.21■■■□□ 2.11
ABCA3Q99758 SNX21-213ENST00000614929 587 ntTSL 5 BASIC28.21■■■□□ 2.11
ABCA3Q99758 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC28.21■■■□□ 2.11
ABCA3Q99758 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
ABCA3Q99758 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC28.21■■■□□ 2.11
ABCA3Q99758 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
ABCA3Q99758 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC28.21■■■□□ 2.11
ABCA3Q99758 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC28.2■■■□□ 2.11
ABCA3Q99758 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
ABCA3Q99758 AC003102.1-202ENST00000563394 1796 ntBASIC28.2■■■□□ 2.11
ABCA3Q99758 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
ABCA3Q99758 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
ABCA3Q99758 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
ABCA3Q99758 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
ABCA3Q99758 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC28.2■■■□□ 2.1
ABCA3Q99758 AC133681.1-201ENST00000465482 601 ntBASIC28.2■■■□□ 2.1
ABCA3Q99758 REXO2-208ENST00000539754 791 ntTSL 2 BASIC28.2■■■□□ 2.1
ABCA3Q99758 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
ABCA3Q99758 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
ABCA3Q99758 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC28.2■■■□□ 2.1
ABCA3Q99758 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
ABCA3Q99758 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
ABCA3Q99758 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
ABCA3Q99758 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC28.19■■■□□ 2.1
ABCA3Q99758 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
ABCA3Q99758 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
ABCA3Q99758 PTPA-214ENST00000423100 988 ntTSL 2 BASIC28.19■■■□□ 2.1
ABCA3Q99758 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC28.19■■■□□ 2.1
ABCA3Q99758 LY6E-205ENST00000519611 635 ntTSL 3 BASIC28.19■■■□□ 2.1
ABCA3Q99758 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC28.19■■■□□ 2.1
ABCA3Q99758 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC28.19■■■□□ 2.1
ABCA3Q99758 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC28.19■■■□□ 2.1
ABCA3Q99758 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
ABCA3Q99758 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
ABCA3Q99758 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
ABCA3Q99758 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC28.18■■■□□ 2.1
ABCA3Q99758 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC28.18■■■□□ 2.1
ABCA3Q99758 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC28.18■■■□□ 2.1
ABCA3Q99758 RN7SL850P-201ENST00000579959 291 ntBASIC28.18■■■□□ 2.1
ABCA3Q99758 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
ABCA3Q99758 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 AL445228.2-201ENST00000605589 952 ntBASIC28.18■■■□□ 2.1
ABCA3Q99758 AC113410.3-201ENST00000623366 203 ntBASIC28.18■■■□□ 2.1
ABCA3Q99758 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC28.18■■■□□ 2.1
ABCA3Q99758 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 CRK-204ENST00000574295 1391 ntTSL 5 BASIC28.18■■■□□ 2.1
ABCA3Q99758 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 SAPCD2P1-201ENST00000395413 1184 ntBASIC28.18■■■□□ 2.1
ABCA3Q99758 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC28.18■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms