Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 SLC7A5P1-201ENST00000568957 537 ntBASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 MFSD11-216ENST00000590393 1141 ntBASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 RARRES2P11-201ENST00000635158 484 ntBASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.71■□□□□ 0.75
PTCHD1Q96NR3 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 KRT16P2-201ENST00000414673 1423 ntBASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
PTCHD1Q96NR3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD1Q96NR3 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 AC073111.5-205ENST00000641717 521 ntBASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD1Q96NR3 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 AC244015.2-201ENST00000616358 1861 ntBASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 AC010536.3-201ENST00000620306 533 ntBASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.67■□□□□ 0.74
PTCHD1Q96NR3 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms