Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.93■□□□□ 0.78
VMP1Q96GC9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VMP1Q96GC9 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VMP1Q96GC9 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VMP1Q96GC9 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.92■□□□□ 0.78
VMP1Q96GC9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VMP1Q96GC9 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
VMP1Q96GC9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
VMP1Q96GC9 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.92■□□□□ 0.78
VMP1Q96GC9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.92■□□□□ 0.78
VMP1Q96GC9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.92■□□□□ 0.78
VMP1Q96GC9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.92■□□□□ 0.78
VMP1Q96GC9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.92■□□□□ 0.78
VMP1Q96GC9 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 AC055733.4-201ENST00000638462 1354 ntBASIC19.92■□□□□ 0.78
VMP1Q96GC9 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.92■□□□□ 0.78
VMP1Q96GC9 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VMP1Q96GC9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VMP1Q96GC9 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VMP1Q96GC9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VMP1Q96GC9 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VMP1Q96GC9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
VMP1Q96GC9 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VMP1Q96GC9 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VMP1Q96GC9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 AC080038.3-201ENST00000623346 1952 ntBASIC19.9■□□□□ 0.78
VMP1Q96GC9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VMP1Q96GC9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VMP1Q96GC9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VMP1Q96GC9 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.9■□□□□ 0.78
VMP1Q96GC9 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VMP1Q96GC9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 AC092666.2-201ENST00000613287 246 ntBASIC19.9■□□□□ 0.78
VMP1Q96GC9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VMP1Q96GC9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VMP1Q96GC9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VMP1Q96GC9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VMP1Q96GC9 AC005229.4-201ENST00000610085 2198 ntBASIC19.9■□□□□ 0.78
VMP1Q96GC9 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
VMP1Q96GC9 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VMP1Q96GC9 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
VMP1Q96GC9 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
VMP1Q96GC9 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
VMP1Q96GC9 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
VMP1Q96GC9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VMP1Q96GC9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VMP1Q96GC9 AP006587.3-201ENST00000525742 1516 ntBASIC19.89■□□□□ 0.77
VMP1Q96GC9 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.89■□□□□ 0.77
VMP1Q96GC9 KRT87P-202ENST00000534226 1464 ntBASIC19.89■□□□□ 0.77
VMP1Q96GC9 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
VMP1Q96GC9 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.89■□□□□ 0.77
VMP1Q96GC9 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VMP1Q96GC9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
VMP1Q96GC9 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.89■□□□□ 0.77
VMP1Q96GC9 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.89■□□□□ 0.77
VMP1Q96GC9 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.89■□□□□ 0.77
VMP1Q96GC9 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VMP1Q96GC9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VMP1Q96GC9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.88■□□□□ 0.77
VMP1Q96GC9 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.88■□□□□ 0.77
VMP1Q96GC9 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
VMP1Q96GC9 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VMP1Q96GC9 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
VMP1Q96GC9 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VMP1Q96GC9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.88■□□□□ 0.77
VMP1Q96GC9 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms