Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
RTF1Q92541 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC27.34■■□□□ 1.97
RTF1Q92541 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
RTF1Q92541 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
RTF1Q92541 AL117328.2-201ENST00000624617 1940 ntBASIC27.33■■□□□ 1.97
RTF1Q92541 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTF1Q92541 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC27.33■■□□□ 1.97
RTF1Q92541 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTF1Q92541 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC27.33■■□□□ 1.97
RTF1Q92541 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTF1Q92541 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC27.33■■□□□ 1.97
RTF1Q92541 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC27.33■■□□□ 1.97
RTF1Q92541 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTF1Q92541 AC091799.1-201ENST00000422823 811 ntBASIC27.33■■□□□ 1.97
RTF1Q92541 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTF1Q92541 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC27.33■■□□□ 1.97
RTF1Q92541 RARRES2P4-201ENST00000514074 484 ntBASIC27.33■■□□□ 1.97
RTF1Q92541 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC27.33■■□□□ 1.97
RTF1Q92541 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC27.33■■□□□ 1.97
RTF1Q92541 MARS-234ENST00000630571 216 ntTSL 5 BASIC27.33■■□□□ 1.97
RTF1Q92541 MARS-235ENST00000630803 183 ntTSL 3 BASIC27.33■■□□□ 1.97
RTF1Q92541 AC133561.1-201ENST00000568600 2415 ntBASIC27.33■■□□□ 1.97
RTF1Q92541 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTF1Q92541 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
RTF1Q92541 AC012676.1-201ENST00000574705 1949 ntBASIC27.33■■□□□ 1.97
RTF1Q92541 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTF1Q92541 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
RTF1Q92541 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
RTF1Q92541 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RTF1Q92541 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RTF1Q92541 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
RTF1Q92541 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RTF1Q92541 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
RTF1Q92541 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RTF1Q92541 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RTF1Q92541 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC27.32■■□□□ 1.96
RTF1Q92541 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RTF1Q92541 MIPEPP3-201ENST00000412105 444 ntBASIC27.32■■□□□ 1.96
RTF1Q92541 RGMA-211ENST00000557420 989 ntTSL 3 BASIC27.32■■□□□ 1.96
RTF1Q92541 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC27.32■■□□□ 1.96
RTF1Q92541 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC27.32■■□□□ 1.96
RTF1Q92541 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RTF1Q92541 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
RTF1Q92541 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
RTF1Q92541 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC27.31■■□□□ 1.96
RTF1Q92541 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC27.31■■□□□ 1.96
RTF1Q92541 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
RTF1Q92541 AC069152.1-201ENST00000438030 544 ntBASIC27.31■■□□□ 1.96
RTF1Q92541 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC27.31■■□□□ 1.96
RTF1Q92541 AC133041.1-202ENST00000642053 222 ntBASIC27.31■■□□□ 1.96
RTF1Q92541 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RTF1Q92541 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTF1Q92541 MFF-203ENST00000349901 1716 ntTSL 2 BASIC27.3■■□□□ 1.96
RTF1Q92541 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTF1Q92541 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTF1Q92541 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
RTF1Q92541 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
RTF1Q92541 MIR4758-201ENST00000577688 71 ntBASIC27.3■■□□□ 1.96
RTF1Q92541 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC27.3■■□□□ 1.96
RTF1Q92541 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTF1Q92541 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTF1Q92541 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC27.3■■□□□ 1.96
RTF1Q92541 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
RTF1Q92541 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
RTF1Q92541 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC27.3■■□□□ 1.96
RTF1Q92541 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC27.29■■□□□ 1.96
RTF1Q92541 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
RTF1Q92541 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC27.29■■□□□ 1.96
RTF1Q92541 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RTF1Q92541 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC27.29■■□□□ 1.96
RTF1Q92541 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RTF1Q92541 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC27.29■■□□□ 1.96
RTF1Q92541 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RTF1Q92541 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RTF1Q92541 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
RTF1Q92541 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RTF1Q92541 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC27.28■■□□□ 1.96
RTF1Q92541 AC073210.2-201ENST00000430369 194 ntBASIC27.28■■□□□ 1.96
RTF1Q92541 CDV3P1-201ENST00000471403 739 ntBASIC27.28■■□□□ 1.96
RTF1Q92541 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC27.28■■□□□ 1.96
RTF1Q92541 KLF13-207ENST00000560473 489 ntTSL 3 BASIC27.28■■□□□ 1.96
RTF1Q92541 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC27.28■■□□□ 1.96
RTF1Q92541 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
RTF1Q92541 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC27.28■■□□□ 1.96
RTF1Q92541 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC27.27■■□□□ 1.96
RTF1Q92541 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC27.27■■□□□ 1.96
RTF1Q92541 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC27.27■■□□□ 1.96
RTF1Q92541 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
RTF1Q92541 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RTF1Q92541 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC27.27■■□□□ 1.96
RTF1Q92541 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
RTF1Q92541 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC27.27■■□□□ 1.96
RTF1Q92541 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RTF1Q92541 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC27.27■■□□□ 1.96
RTF1Q92541 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC27.27■■□□□ 1.96
RTF1Q92541 AC098934.4-201ENST00000564127 592 ntBASIC27.27■■□□□ 1.96
RTF1Q92541 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
RTF1Q92541 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RTF1Q92541 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
RTF1Q92541 AC010980.2-201ENST00000587099 1412 ntBASIC27.26■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms