Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 KRT18P20-201ENST00000548986 1279 ntBASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 AC061975.6-201ENST00000579045 1553 ntBASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
RFWD3Q6PCD5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 AC073130.3-201ENST00000624389 2278 ntBASIC21.77■■□□□ 1.08
RFWD3Q6PCD5 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
RFWD3Q6PCD5 FBXW4P1-201ENST00000426721 2239 ntBASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 DUX4L16-201ENST00000555130 1264 ntBASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 AC008175.2-201ENST00000612840 297 ntBASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.76■■□□□ 1.07
RFWD3Q6PCD5 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 AC026185.1-201ENST00000445748 174 ntBASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.75■■□□□ 1.07
RFWD3Q6PCD5 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFWD3Q6PCD5 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFWD3Q6PCD5 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms