Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.96■□□□□ 0.47
USF3Q68DE3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.96■□□□□ 0.47
USF3Q68DE3 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF3Q68DE3 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF3Q68DE3 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF3Q68DE3 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.95■□□□□ 0.46
USF3Q68DE3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.95■□□□□ 0.46
USF3Q68DE3 POU5F1P4-201ENST00000413175 1085 ntBASIC17.95■□□□□ 0.46
USF3Q68DE3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.95■□□□□ 0.46
USF3Q68DE3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.95■□□□□ 0.46
USF3Q68DE3 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
USF3Q68DE3 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
USF3Q68DE3 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.95■□□□□ 0.46
USF3Q68DE3 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.95■□□□□ 0.46
USF3Q68DE3 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.95■□□□□ 0.46
USF3Q68DE3 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.95■□□□□ 0.46
USF3Q68DE3 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.95■□□□□ 0.46
USF3Q68DE3 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.95■□□□□ 0.46
USF3Q68DE3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.95■□□□□ 0.46
USF3Q68DE3 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.95■□□□□ 0.46
USF3Q68DE3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF3Q68DE3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.94■□□□□ 0.46
USF3Q68DE3 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.94■□□□□ 0.46
USF3Q68DE3 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.94■□□□□ 0.46
USF3Q68DE3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.94■□□□□ 0.46
USF3Q68DE3 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.94■□□□□ 0.46
USF3Q68DE3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 ECEL1P1-201ENST00000373592 1742 ntBASIC17.94■□□□□ 0.46
USF3Q68DE3 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
USF3Q68DE3 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
USF3Q68DE3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
USF3Q68DE3 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF3Q68DE3 AL512625.2-201ENST00000417533 625 ntBASIC17.94■□□□□ 0.46
USF3Q68DE3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.94■□□□□ 0.46
USF3Q68DE3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.94■□□□□ 0.46
USF3Q68DE3 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.94■□□□□ 0.46
USF3Q68DE3 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.94■□□□□ 0.46
USF3Q68DE3 MYC-209ENST00000641252 345 ntBASIC17.94■□□□□ 0.46
USF3Q68DE3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.93■□□□□ 0.46
USF3Q68DE3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 FBXW4P1-201ENST00000426721 2239 ntBASIC17.93■□□□□ 0.46
USF3Q68DE3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
USF3Q68DE3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.93■□□□□ 0.46
USF3Q68DE3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.93■□□□□ 0.46
USF3Q68DE3 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.93■□□□□ 0.46
USF3Q68DE3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.93■□□□□ 0.46
USF3Q68DE3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
USF3Q68DE3 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC17.93■□□□□ 0.46
USF3Q68DE3 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.93■□□□□ 0.46
USF3Q68DE3 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USF3Q68DE3 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.92■□□□□ 0.46
USF3Q68DE3 KRT16P2-201ENST00000414673 1423 ntBASIC17.92■□□□□ 0.46
USF3Q68DE3 BX276092.2-201ENST00000417668 665 ntBASIC17.92■□□□□ 0.46
USF3Q68DE3 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
USF3Q68DE3 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.92■□□□□ 0.46
USF3Q68DE3 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.92■□□□□ 0.46
USF3Q68DE3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
USF3Q68DE3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USF3Q68DE3 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF3Q68DE3 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF3Q68DE3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.92■□□□□ 0.46
USF3Q68DE3 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.92■□□□□ 0.46
USF3Q68DE3 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USF3Q68DE3 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USF3Q68DE3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USF3Q68DE3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.92■□□□□ 0.46
USF3Q68DE3 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF3Q68DE3 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USF3Q68DE3 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.91■□□□□ 0.46
USF3Q68DE3 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.91■□□□□ 0.46
USF3Q68DE3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms