Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNFT1Q5M7Z0 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.89■□□□□ 0.61
RNFT1Q5M7Z0 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNFT1Q5M7Z0 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 AL355472.2-201ENST00000422958 438 ntBASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 DUSP5P2-201ENST00000426873 1033 ntBASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNFT1Q5M7Z0 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 POU5F1P3-201ENST00000428824 1078 ntBASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 AC097658.1-201ENST00000475555 843 ntBASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 AC242852.2-201ENST00000615738 1807 ntBASIC18.87■□□□□ 0.61
RNFT1Q5M7Z0 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 AC066615.1-201ENST00000640911 628 ntBASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 GUSBP5-202ENST00000510805 1989 ntBASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNFT1Q5M7Z0 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 AC233723.2-201ENST00000623798 2106 ntBASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 FAM21FP-204ENST00000608637 956 ntBASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.85■□□□□ 0.61
RNFT1Q5M7Z0 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms