Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.07■□□□□ 0.8
COL28A1Q2UY09 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
COL28A1Q2UY09 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL28A1Q2UY09 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL28A1Q2UY09 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 AC010141.2-201ENST00000452426 721 ntBASIC20.06■□□□□ 0.8
COL28A1Q2UY09 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL28A1Q2UY09 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL28A1Q2UY09 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 AC007322.4-201ENST00000509611 723 ntBASIC20.04■□□□□ 0.8
COL28A1Q2UY09 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 Z99916.2-201ENST00000604037 246 ntBASIC20.04■□□□□ 0.8
COL28A1Q2UY09 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL28A1Q2UY09 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 LINC01960-201ENST00000563759 1884 ntBASIC20.03■□□□□ 0.8
COL28A1Q2UY09 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL28A1Q2UY09 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL28A1Q2UY09 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL28A1Q2UY09 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms