Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.74■□□□□ 0.91
LIMK1P53667 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMK1P53667 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.74■□□□□ 0.91
LIMK1P53667 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMK1P53667 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMK1P53667 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMK1P53667 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMK1P53667 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK1P53667 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMK1P53667 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK1P53667 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMK1P53667 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK1P53667 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
LIMK1P53667 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.73■□□□□ 0.91
LIMK1P53667 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK1P53667 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
LIMK1P53667 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
LIMK1P53667 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK1P53667 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMK1P53667 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK1P53667 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
LIMK1P53667 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.73■□□□□ 0.91
LIMK1P53667 KRT18P21-201ENST00000515767 1272 ntBASIC20.73■□□□□ 0.91
LIMK1P53667 C1QBPP2-201ENST00000528754 825 ntBASIC20.73■□□□□ 0.91
LIMK1P53667 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK1P53667 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.73■□□□□ 0.91
LIMK1P53667 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.73■□□□□ 0.91
LIMK1P53667 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMK1P53667 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK1P53667 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK1P53667 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
LIMK1P53667 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK1P53667 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.73■□□□□ 0.91
LIMK1P53667 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LIMK1P53667 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.72■□□□□ 0.91
LIMK1P53667 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
LIMK1P53667 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.72■□□□□ 0.91
LIMK1P53667 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.72■□□□□ 0.91
LIMK1P53667 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 AC008175.2-201ENST00000612840 297 ntBASIC20.72■□□□□ 0.91
LIMK1P53667 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.72■□□□□ 0.91
LIMK1P53667 HLA-B-256ENST00000639848 1089 ntBASIC20.72■□□□□ 0.91
LIMK1P53667 AP004607.7-201ENST00000527152 1677 ntBASIC20.72■□□□□ 0.91
LIMK1P53667 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMK1P53667 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK1P53667 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.72■□□□□ 0.91
LIMK1P53667 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK1P53667 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK1P53667 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK1P53667 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK1P53667 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK1P53667 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK1P53667 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.71■□□□□ 0.91
LIMK1P53667 AC079089.2-201ENST00000531211 1277 ntBASIC20.71■□□□□ 0.91
LIMK1P53667 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.71■□□□□ 0.91
LIMK1P53667 RN7SL471P-201ENST00000580476 299 ntBASIC20.71■□□□□ 0.91
LIMK1P53667 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK1P53667 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK1P53667 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
LIMK1P53667 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.71■□□□□ 0.91
LIMK1P53667 AL024507.2-201ENST00000606070 2574 ntBASIC20.71■□□□□ 0.91
LIMK1P53667 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
LIMK1P53667 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
LIMK1P53667 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
LIMK1P53667 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
LIMK1P53667 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
LIMK1P53667 KRT17P3-201ENST00000420566 1262 ntBASIC20.7■□□□□ 0.9
LIMK1P53667 BX088651.1-201ENST00000540551 451 ntBASIC20.7■□□□□ 0.9
LIMK1P53667 AL034346.1-201ENST00000568244 1277 ntBASIC20.7■□□□□ 0.9
LIMK1P53667 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMK1P53667 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
LIMK1P53667 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 AC137767.1-201ENST00000602918 1920 ntBASIC20.7■□□□□ 0.9
LIMK1P53667 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK1P53667 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK1P53667 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK1P53667 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
LIMK1P53667 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK1P53667 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK1P53667 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms