Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.34■□□□□ 0.53
LMX1BO60663 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LMX1BO60663 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 SMUG1P1-201ENST00000590640 811 ntBASIC18.34■□□□□ 0.53
LMX1BO60663 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.34■□□□□ 0.53
LMX1BO60663 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.34■□□□□ 0.53
LMX1BO60663 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LMX1BO60663 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.34■□□□□ 0.53
LMX1BO60663 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.34■□□□□ 0.53
LMX1BO60663 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1BO60663 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LMX1BO60663 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LMX1BO60663 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
LMX1BO60663 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LMX1BO60663 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1BO60663 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.33■□□□□ 0.52
LMX1BO60663 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1BO60663 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.33■□□□□ 0.52
LMX1BO60663 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LMX1BO60663 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1BO60663 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1BO60663 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1BO60663 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
LMX1BO60663 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.33■□□□□ 0.52
LMX1BO60663 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.33■□□□□ 0.52
LMX1BO60663 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1BO60663 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1BO60663 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LMX1BO60663 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.33■□□□□ 0.52
LMX1BO60663 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LMX1BO60663 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.32■□□□□ 0.52
LMX1BO60663 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.32■□□□□ 0.52
LMX1BO60663 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.32■□□□□ 0.52
LMX1BO60663 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.32■□□□□ 0.52
LMX1BO60663 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LMX1BO60663 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1BO60663 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.31■□□□□ 0.52
LMX1BO60663 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.31■□□□□ 0.52
LMX1BO60663 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1BO60663 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1BO60663 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1BO60663 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1BO60663 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LMX1BO60663 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1BO60663 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1BO60663 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1BO60663 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.31■□□□□ 0.52
LMX1BO60663 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.31■□□□□ 0.52
LMX1BO60663 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.31■□□□□ 0.52
LMX1BO60663 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1BO60663 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.31■□□□□ 0.52
LMX1BO60663 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.31■□□□□ 0.52
LMX1BO60663 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1BO60663 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1BO60663 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
LMX1BO60663 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.31■□□□□ 0.52
LMX1BO60663 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1BO60663 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1BO60663 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
LMX1BO60663 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1BO60663 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1BO60663 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1BO60663 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1BO60663 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1BO60663 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LMX1BO60663 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.3■□□□□ 0.52
LMX1BO60663 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.3■□□□□ 0.52
LMX1BO60663 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.3■□□□□ 0.52
LMX1BO60663 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LMX1BO60663 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1BO60663 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms