Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
DDX4Q9NQI0 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC24.92■■□□□ 1.58
DDX4Q9NQI0 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
DDX4Q9NQI0 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 DUSP5P2-201ENST00000426873 1033 ntBASIC24.91■■□□□ 1.58
DDX4Q9NQI0 PBX1-209ENST00000485769 834 ntTSL 2 BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC24.91■■□□□ 1.58
DDX4Q9NQI0 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 NARF-205ENST00000412079 1760 ntTSL 5 BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 OR2A1-AS1-201ENST00000462305 773 ntBASIC24.9■■□□□ 1.58
DDX4Q9NQI0 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
DDX4Q9NQI0 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC24.89■■□□□ 1.58
DDX4Q9NQI0 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.58
DDX4Q9NQI0 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
DDX4Q9NQI0 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
DDX4Q9NQI0 AL355472.2-201ENST00000422958 438 ntBASIC24.89■■□□□ 1.58
DDX4Q9NQI0 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.58
DDX4Q9NQI0 AC008687.6-201ENST00000596318 630 ntBASIC24.89■■□□□ 1.58
DDX4Q9NQI0 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
DDX4Q9NQI0 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC24.89■■□□□ 1.58
DDX4Q9NQI0 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
DDX4Q9NQI0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 KRT17P1-201ENST00000399211 1546 ntBASIC24.88■■□□□ 1.57
DDX4Q9NQI0 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 AC097658.1-201ENST00000475555 843 ntBASIC24.88■■□□□ 1.57
DDX4Q9NQI0 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
DDX4Q9NQI0 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC24.87■■□□□ 1.57
DDX4Q9NQI0 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 AC245052.3-201ENST00000450182 901 ntBASIC24.86■■□□□ 1.57
DDX4Q9NQI0 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX4Q9NQI0 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 STX5-203ENST00000394690 1568 ntTSL 5 BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 PRORSD1P-201ENST00000295112 541 ntBASIC24.85■■□□□ 1.57
DDX4Q9NQI0 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC24.85■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms