Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.77■□□□□ 0.75
PTCHD1Q96NR3 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 MYCNOS-205ENST00000641950 531 ntBASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD1Q96NR3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 AC061975.6-201ENST00000579045 1553 ntBASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 AC011767.1-201ENST00000617410 1153 ntBASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD1Q96NR3 AC007375.3-201ENST00000600936 2314 ntBASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 AC080038.1-201ENST00000611274 1154 ntBASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD1Q96NR3 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD1Q96NR3 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.72■□□□□ 0.75
PTCHD1Q96NR3 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms