Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 AC005363.2-201ENST00000618631 242 ntBASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 AL023875.1-201ENST00000640777 796 ntBASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 AC239809.2-201ENST00000415381 517 ntBASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SMC1BQ8NDV3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SMC1BQ8NDV3 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SMC1BQ8NDV3 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.09■■□□□ 1.61
SMC1BQ8NDV3 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SMC1BQ8NDV3 AC110285.5-201ENST00000611501 352 ntBASIC25.09■■□□□ 1.61
SMC1BQ8NDV3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SMC1BQ8NDV3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
SMC1BQ8NDV3 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SMC1BQ8NDV3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SMC1BQ8NDV3 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 KLF2-202ENST00000592003 564 ntTSL 3 BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
SMC1BQ8NDV3 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.6
SMC1BQ8NDV3 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
SMC1BQ8NDV3 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC25.08■■□□□ 1.6
SMC1BQ8NDV3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
SMC1BQ8NDV3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 OR7E47P-201ENST00000546390 1422 ntBASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 RARRES2P10-201ENST00000564312 460 ntBASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
SMC1BQ8NDV3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
SMC1BQ8NDV3 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC25.06■■□□□ 1.6
SMC1BQ8NDV3 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
SMC1BQ8NDV3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SMC1BQ8NDV3 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC25.06■■□□□ 1.6
SMC1BQ8NDV3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC25.06■■□□□ 1.6
SMC1BQ8NDV3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
SMC1BQ8NDV3 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 AC005521.1-201ENST00000393351 872 ntBASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 TPM4P1-201ENST00000436100 807 ntBASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 AC145285.6-201ENST00000604632 637 ntBASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC25.05■■□□□ 1.6
SMC1BQ8NDV3 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
SMC1BQ8NDV3 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SMC1BQ8NDV3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SMC1BQ8NDV3 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SMC1BQ8NDV3 MCRIP2P1-201ENST00000394346 511 ntBASIC25.04■■□□□ 1.6
SMC1BQ8NDV3 AC026471.5-201ENST00000615068 467 ntBASIC25.04■■□□□ 1.6
SMC1BQ8NDV3 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms