Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 AL138781.1-201ENST00000566567 1274 ntBASIC23.4■■□□□ 1.34
CCDC60Q8IWA6 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC60Q8IWA6 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC23.4■■□□□ 1.34
CCDC60Q8IWA6 MYB-221ENST00000527615 2381 ntTSL 5 BASIC23.4■■□□□ 1.34
CCDC60Q8IWA6 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC60Q8IWA6 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC60Q8IWA6 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
CCDC60Q8IWA6 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
CCDC60Q8IWA6 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CCDC60Q8IWA6 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
CCDC60Q8IWA6 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 AC093787.1-201ENST00000450396 207 ntBASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 AC016405.3-201ENST00000607710 860 ntBASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.38■■□□□ 1.33
CCDC60Q8IWA6 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC60Q8IWA6 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 SLC29A4P1-201ENST00000398760 971 ntBASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 AL591742.1-201ENST00000604433 565 ntBASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC60Q8IWA6 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 AC091799.1-201ENST00000422823 811 ntBASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 OR10C1-204ENST00000622521 1039 ntBASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.35■■□□□ 1.33
CCDC60Q8IWA6 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.34■■□□□ 1.33
CCDC60Q8IWA6 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC60Q8IWA6 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.34■■□□□ 1.33
CCDC60Q8IWA6 AC245052.3-201ENST00000450182 901 ntBASIC23.34■■□□□ 1.33
CCDC60Q8IWA6 AL162412.1-201ENST00000567129 965 ntBASIC23.34■■□□□ 1.33
CCDC60Q8IWA6 AC069236.1-201ENST00000604339 616 ntBASIC23.34■■□□□ 1.33
CCDC60Q8IWA6 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC60Q8IWA6 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.34■■□□□ 1.33
CCDC60Q8IWA6 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.34■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms