Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.05■□□□□ 0.96
CCNFP41002 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCNFP41002 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CCNFP41002 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CCNFP41002 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCNFP41002 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCNFP41002 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCNFP41002 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.05■□□□□ 0.96
CCNFP41002 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.05■□□□□ 0.96
CCNFP41002 AC105233.4-201ENST00000642045 216 ntBASIC21.05■□□□□ 0.96
CCNFP41002 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CCNFP41002 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CCNFP41002 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.05■□□□□ 0.96
CCNFP41002 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCNFP41002 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.05■□□□□ 0.96
CCNFP41002 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.04■□□□□ 0.96
CCNFP41002 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CCNFP41002 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 IRS3P-201ENST00000223076 1006 ntBASIC21.04■□□□□ 0.96
CCNFP41002 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CCNFP41002 SMUG1P1-201ENST00000590640 811 ntBASIC21.04■□□□□ 0.96
CCNFP41002 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
CCNFP41002 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CCNFP41002 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CCNFP41002 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CCNFP41002 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNFP41002 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.04■□□□□ 0.96
CCNFP41002 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNFP41002 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCNFP41002 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNFP41002 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNFP41002 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNFP41002 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.03■□□□□ 0.96
CCNFP41002 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.03■□□□□ 0.96
CCNFP41002 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.03■□□□□ 0.96
CCNFP41002 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.03■□□□□ 0.96
CCNFP41002 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNFP41002 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNFP41002 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCNFP41002 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNFP41002 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNFP41002 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
CCNFP41002 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNFP41002 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
CCNFP41002 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CCNFP41002 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNFP41002 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.02■□□□□ 0.96
CCNFP41002 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNFP41002 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNFP41002 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CCNFP41002 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.02■□□□□ 0.96
CCNFP41002 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.02■□□□□ 0.96
CCNFP41002 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNFP41002 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCNFP41002 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.02■□□□□ 0.96
CCNFP41002 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
CCNFP41002 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNFP41002 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNFP41002 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CCNFP41002 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CCNFP41002 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNFP41002 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.01■□□□□ 0.95
CCNFP41002 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.01■□□□□ 0.95
CCNFP41002 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNFP41002 AP006587.3-201ENST00000525742 1516 ntBASIC21.01■□□□□ 0.95
CCNFP41002 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNFP41002 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CCNFP41002 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCNFP41002 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.01■□□□□ 0.95
CCNFP41002 AL354811.1-201ENST00000610286 706 ntBASIC21.01■□□□□ 0.95
CCNFP41002 AL358852.1-201ENST00000623174 1268 ntBASIC21.01■□□□□ 0.95
CCNFP41002 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
CCNFP41002 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
CCNFP41002 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNFP41002 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNFP41002 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
CCNFP41002 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
CCNFP41002 GABARAPL3-202ENST00000624044 1851 ntBASIC21.01■□□□□ 0.95
CCNFP41002 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNFP41002 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CCNFP41002 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21■□□□□ 0.95
CCNFP41002 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNFP41002 PKD1P6-201ENST00000343738 4769 ntBASIC21■□□□□ 0.95
CCNFP41002 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21■□□□□ 0.95
CCNFP41002 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21■□□□□ 0.95
CCNFP41002 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms