Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
RPA3P35244 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 MIR939-201ENST00000401314 82 ntBASIC21.14■□□□□ 0.97
RPA3P35244 AP005435.1-201ENST00000529293 1178 ntBASIC21.14■□□□□ 0.97
RPA3P35244 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.14■□□□□ 0.97
RPA3P35244 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.14■□□□□ 0.97
RPA3P35244 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.14■□□□□ 0.97
RPA3P35244 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.14■□□□□ 0.97
RPA3P35244 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.13■□□□□ 0.97
RPA3P35244 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPA3P35244 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.13■□□□□ 0.97
RPA3P35244 AC003102.1-202ENST00000563394 1796 ntBASIC21.13■□□□□ 0.97
RPA3P35244 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
RPA3P35244 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RPA3P35244 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.13■□□□□ 0.97
RPA3P35244 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.13■□□□□ 0.97
RPA3P35244 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.13■□□□□ 0.97
RPA3P35244 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPA3P35244 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.13■□□□□ 0.97
RPA3P35244 AC091305.1-201ENST00000479476 895 ntBASIC21.13■□□□□ 0.97
RPA3P35244 SUDS3P1-201ENST00000505831 966 ntBASIC21.13■□□□□ 0.97
RPA3P35244 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.13■□□□□ 0.97
RPA3P35244 AL136967.2-201ENST00000623968 743 ntBASIC21.13■□□□□ 0.97
RPA3P35244 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RPA3P35244 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPA3P35244 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPA3P35244 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPA3P35244 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPA3P35244 RASA4CP-201ENST00000424092 1398 ntBASIC21.12■□□□□ 0.97
RPA3P35244 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RPA3P35244 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPA3P35244 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPA3P35244 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPA3P35244 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.12■□□□□ 0.97
RPA3P35244 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.12■□□□□ 0.97
RPA3P35244 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RPA3P35244 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RPA3P35244 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.12■□□□□ 0.97
RPA3P35244 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPA3P35244 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RPA3P35244 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPA3P35244 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RPA3P35244 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPA3P35244 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPA3P35244 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RPA3P35244 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.11■□□□□ 0.97
RPA3P35244 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.11■□□□□ 0.97
RPA3P35244 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPA3P35244 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.11■□□□□ 0.97
RPA3P35244 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RPA3P35244 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RPA3P35244 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.11■□□□□ 0.97
RPA3P35244 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RPA3P35244 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.11■□□□□ 0.97
RPA3P35244 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
RPA3P35244 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RPA3P35244 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RPA3P35244 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPA3P35244 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RPA3P35244 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPA3P35244 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
RPA3P35244 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
RPA3P35244 AC073314.1-201ENST00000568729 2216 ntBASIC21.1■□□□□ 0.97
RPA3P35244 AP005212.1-201ENST00000581547 1997 ntBASIC21.1■□□□□ 0.97
RPA3P35244 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RPA3P35244 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
RPA3P35244 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.1■□□□□ 0.97
RPA3P35244 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
RPA3P35244 GABARAPL3-202ENST00000624044 1851 ntBASIC21.1■□□□□ 0.97
RPA3P35244 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RPA3P35244 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
RPA3P35244 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RPA3P35244 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RPA3P35244 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RPA3P35244 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RPA3P35244 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RPA3P35244 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
RPA3P35244 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.09■□□□□ 0.97
RPA3P35244 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RPA3P35244 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RPA3P35244 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.09■□□□□ 0.97
RPA3P35244 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.09■□□□□ 0.97
RPA3P35244 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RPA3P35244 AC010141.3-201ENST00000456659 717 ntBASIC21.09■□□□□ 0.97
RPA3P35244 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RPA3P35244 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
RPA3P35244 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
RPA3P35244 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
RPA3P35244 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
RPA3P35244 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
RPA3P35244 AL391422.3-201ENST00000603791 2761 ntBASIC21.08■□□□□ 0.97
RPA3P35244 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms