Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF1P22415 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.72■□□□□ 0.43
USF1P22415 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.72■□□□□ 0.43
USF1P22415 AC008694.1-202ENST00000636953 945 ntBASIC17.72■□□□□ 0.43
USF1P22415 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USF1P22415 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
USF1P22415 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF1P22415 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF1P22415 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF1P22415 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
USF1P22415 AP006587.3-201ENST00000525742 1516 ntBASIC17.72■□□□□ 0.43
USF1P22415 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF1P22415 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USF1P22415 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
USF1P22415 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
USF1P22415 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.71■□□□□ 0.43
USF1P22415 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.71■□□□□ 0.43
USF1P22415 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.71■□□□□ 0.43
USF1P22415 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
USF1P22415 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.71■□□□□ 0.43
USF1P22415 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.71■□□□□ 0.43
USF1P22415 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.71■□□□□ 0.43
USF1P22415 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USF1P22415 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
USF1P22415 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC17.7■□□□□ 0.42
USF1P22415 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.7■□□□□ 0.42
USF1P22415 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.7■□□□□ 0.42
USF1P22415 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 AC008175.2-201ENST00000612840 297 ntBASIC17.7■□□□□ 0.42
USF1P22415 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.7■□□□□ 0.42
USF1P22415 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.7■□□□□ 0.42
USF1P22415 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 AC068338.2-201ENST00000563278 1430 ntBASIC17.7■□□□□ 0.42
USF1P22415 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC17.7■□□□□ 0.42
USF1P22415 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.7■□□□□ 0.42
USF1P22415 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USF1P22415 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
USF1P22415 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USF1P22415 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USF1P22415 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.69■□□□□ 0.42
USF1P22415 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
USF1P22415 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USF1P22415 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC17.69■□□□□ 0.42
USF1P22415 MKRN4P-201ENST00000444706 1521 ntBASIC17.69■□□□□ 0.42
USF1P22415 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
USF1P22415 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USF1P22415 CYP2T1P-201ENST00000432607 1285 ntBASIC17.69■□□□□ 0.42
USF1P22415 AC007322.4-201ENST00000509611 723 ntBASIC17.69■□□□□ 0.42
USF1P22415 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
USF1P22415 MIR4651-201ENST00000582622 73 ntBASIC17.69■□□□□ 0.42
USF1P22415 AC069236.1-201ENST00000604339 616 ntBASIC17.69■□□□□ 0.42
USF1P22415 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.69■□□□□ 0.42
USF1P22415 OR10C1-204ENST00000622521 1039 ntBASIC17.69■□□□□ 0.42
USF1P22415 AC066615.1-201ENST00000640911 628 ntBASIC17.69■□□□□ 0.42
USF1P22415 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
USF1P22415 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
USF1P22415 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
USF1P22415 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USF1P22415 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USF1P22415 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USF1P22415 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.69■□□□□ 0.42
USF1P22415 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
USF1P22415 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
USF1P22415 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.68■□□□□ 0.42
USF1P22415 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
USF1P22415 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.68■□□□□ 0.42
USF1P22415 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.68■□□□□ 0.42
USF1P22415 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.68■□□□□ 0.42
USF1P22415 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.68■□□□□ 0.42
USF1P22415 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
USF1P22415 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms