Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 AC128676.1-201ENST00000454392 318 ntBASIC17.52■□□□□ 0.4
ABCA1O95477 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.52■□□□□ 0.4
ABCA1O95477 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA1O95477 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA1O95477 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
ABCA1O95477 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA1O95477 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA1O95477 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA1O95477 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA1O95477 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
ABCA1O95477 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA1O95477 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA1O95477 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA1O95477 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA1O95477 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ABCA1O95477 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ABCA1O95477 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.52■□□□□ 0.39
ABCA1O95477 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ABCA1O95477 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
ABCA1O95477 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.52■□□□□ 0.39
ABCA1O95477 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
ABCA1O95477 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
ABCA1O95477 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.51■□□□□ 0.39
ABCA1O95477 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.51■□□□□ 0.39
ABCA1O95477 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
ABCA1O95477 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.51■□□□□ 0.39
ABCA1O95477 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA1O95477 AC026366.1-201ENST00000488803 879 ntBASIC17.51■□□□□ 0.39
ABCA1O95477 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
ABCA1O95477 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.51■□□□□ 0.39
ABCA1O95477 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.51■□□□□ 0.39
ABCA1O95477 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.51■□□□□ 0.39
ABCA1O95477 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA1O95477 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA1O95477 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
ABCA1O95477 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.51■□□□□ 0.39
ABCA1O95477 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA1O95477 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA1O95477 AC097658.1-201ENST00000475555 843 ntBASIC17.51■□□□□ 0.39
ABCA1O95477 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
ABCA1O95477 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.51■□□□□ 0.39
ABCA1O95477 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA1O95477 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA1O95477 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.5■□□□□ 0.39
ABCA1O95477 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA1O95477 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.5■□□□□ 0.39
ABCA1O95477 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.5■□□□□ 0.39
ABCA1O95477 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA1O95477 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
ABCA1O95477 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA1O95477 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA1O95477 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA1O95477 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA1O95477 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.5■□□□□ 0.39
ABCA1O95477 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.5■□□□□ 0.39
ABCA1O95477 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA1O95477 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA1O95477 POU5F1P4-201ENST00000413175 1085 ntBASIC17.5■□□□□ 0.39
ABCA1O95477 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA1O95477 AC093787.1-201ENST00000450396 207 ntBASIC17.5■□□□□ 0.39
ABCA1O95477 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.5■□□□□ 0.39
ABCA1O95477 AP003097.1-201ENST00000530657 1135 ntBASIC17.5■□□□□ 0.39
ABCA1O95477 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA1O95477 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA1O95477 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA1O95477 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA1O95477 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA1O95477 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
ABCA1O95477 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.49■□□□□ 0.39
ABCA1O95477 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.49■□□□□ 0.39
ABCA1O95477 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.49■□□□□ 0.39
ABCA1O95477 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA1O95477 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA1O95477 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA1O95477 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA1O95477 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
ABCA1O95477 AC012676.1-201ENST00000574705 1949 ntBASIC17.49■□□□□ 0.39
ABCA1O95477 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA1O95477 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.49■□□□□ 0.39
ABCA1O95477 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.49■□□□□ 0.39
ABCA1O95477 RPS2P4-201ENST00000476944 856 ntBASIC17.49■□□□□ 0.39
ABCA1O95477 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.49■□□□□ 0.39
ABCA1O95477 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.49■□□□□ 0.39
ABCA1O95477 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.49■□□□□ 0.39
ABCA1O95477 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC17.49■□□□□ 0.39
ABCA1O95477 KRT16P2-201ENST00000414673 1423 ntBASIC17.49■□□□□ 0.39
ABCA1O95477 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
ABCA1O95477 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA1O95477 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
ABCA1O95477 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA1O95477 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA1O95477 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA1O95477 AP006587.3-201ENST00000525742 1516 ntBASIC17.48■□□□□ 0.39
ABCA1O95477 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA1O95477 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA1O95477 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA1O95477 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
ABCA1O95477 UNC93B4-201ENST00000505679 747 ntBASIC17.48■□□□□ 0.39
ABCA1O95477 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms