Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH4O15457 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH4O15457 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH4O15457 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH4O15457 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH4O15457 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH4O15457 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
MSH4O15457 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC23.66■■□□□ 1.38
MSH4O15457 METTL26-203ENST00000397664 604 ntTSL 2 BASIC23.66■■□□□ 1.38
MSH4O15457 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.66■■□□□ 1.38
MSH4O15457 CNN2P6-201ENST00000439038 900 ntBASIC23.66■■□□□ 1.38
MSH4O15457 TERF1P5-201ENST00000477545 1207 ntBASIC23.66■■□□□ 1.38
MSH4O15457 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC23.66■■□□□ 1.38
MSH4O15457 FGF8-207ENST00000618991 856 ntTSL 3 BASIC23.66■■□□□ 1.38
MSH4O15457 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH4O15457 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
MSH4O15457 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH4O15457 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH4O15457 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.65■■□□□ 1.38
MSH4O15457 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH4O15457 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH4O15457 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH4O15457 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC23.65■■□□□ 1.38
MSH4O15457 AC026185.1-201ENST00000445748 174 ntBASIC23.65■■□□□ 1.38
MSH4O15457 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC23.65■■□□□ 1.38
MSH4O15457 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
MSH4O15457 RBM17P2-201ENST00000616397 1405 ntBASIC23.65■■□□□ 1.38
MSH4O15457 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.65■■□□□ 1.38
MSH4O15457 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.65■■□□□ 1.38
MSH4O15457 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
MSH4O15457 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
MSH4O15457 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
MSH4O15457 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC23.64■■□□□ 1.37
MSH4O15457 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.64■■□□□ 1.37
MSH4O15457 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
MSH4O15457 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC23.64■■□□□ 1.37
MSH4O15457 MAZ-216ENST00000616501 991 ntTSL 5 BASIC23.64■■□□□ 1.37
MSH4O15457 MDK-213ENST00000617138 635 ntTSL 2 BASIC23.64■■□□□ 1.37
MSH4O15457 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
MSH4O15457 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.63■■□□□ 1.37
MSH4O15457 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
MSH4O15457 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
MSH4O15457 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.63■■□□□ 1.37
MSH4O15457 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC23.63■■□□□ 1.37
MSH4O15457 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 Z98882.1-201ENST00000622160 2253 ntBASIC23.63■■□□□ 1.37
MSH4O15457 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH4O15457 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC23.63■■□□□ 1.37
MSH4O15457 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.63■■□□□ 1.37
MSH4O15457 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC23.62■■□□□ 1.37
MSH4O15457 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH4O15457 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.62■■□□□ 1.37
MSH4O15457 CROCCP5-201ENST00000436658 830 ntBASIC23.62■■□□□ 1.37
MSH4O15457 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.62■■□□□ 1.37
MSH4O15457 AC231657.2-201ENST00000624556 255 ntBASIC23.62■■□□□ 1.37
MSH4O15457 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH4O15457 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH4O15457 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.62■■□□□ 1.37
MSH4O15457 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.62■■□□□ 1.37
MSH4O15457 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.61■■□□□ 1.37
MSH4O15457 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH4O15457 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH4O15457 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH4O15457 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH4O15457 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
MSH4O15457 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
MSH4O15457 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH4O15457 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.61■■□□□ 1.37
MSH4O15457 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH4O15457 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH4O15457 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH4O15457 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH4O15457 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.61■■□□□ 1.37
MSH4O15457 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH4O15457 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH4O15457 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH4O15457 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH4O15457 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH4O15457 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH4O15457 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH4O15457 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
MSH4O15457 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH4O15457 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.6■■□□□ 1.37
MSH4O15457 AC007322.1-201ENST00000426983 750 ntBASIC23.6■■□□□ 1.37
MSH4O15457 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH4O15457 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH4O15457 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH4O15457 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms