Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Chmp7Q8R1T1 Gm6658-202ENSMUST00000209493 1885 ntBASIC32.53■■■□□ 2.8
Chmp7Q8R1T1 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Chmp7Q8R1T1 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC32.51■■■□□ 2.8
Chmp7Q8R1T1 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
Chmp7Q8R1T1 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.51■■■□□ 2.79
Chmp7Q8R1T1 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
Chmp7Q8R1T1 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC32.5■■■□□ 2.79
Chmp7Q8R1T1 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
Chmp7Q8R1T1 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Chmp7Q8R1T1 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC32.48■■■□□ 2.79
Chmp7Q8R1T1 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Chmp7Q8R1T1 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Chmp7Q8R1T1 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
Chmp7Q8R1T1 Gm42809-201ENSMUST00000198429 1138 ntBASIC32.45■■■□□ 2.79
Chmp7Q8R1T1 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
Chmp7Q8R1T1 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC32.44■■■□□ 2.78
Chmp7Q8R1T1 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC32.43■■■□□ 2.78
Chmp7Q8R1T1 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
Chmp7Q8R1T1 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
Chmp7Q8R1T1 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC32.4■■■□□ 2.78
Chmp7Q8R1T1 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC32.4■■■□□ 2.78
Chmp7Q8R1T1 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
Chmp7Q8R1T1 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC32.37■■■□□ 2.77
Chmp7Q8R1T1 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC32.37■■■□□ 2.77
Chmp7Q8R1T1 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Chmp7Q8R1T1 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC32.36■■■□□ 2.77
Chmp7Q8R1T1 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
Chmp7Q8R1T1 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC32.33■■■□□ 2.77
Chmp7Q8R1T1 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Chmp7Q8R1T1 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
Chmp7Q8R1T1 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Chmp7Q8R1T1 Nkain2-201ENSMUST00000092602 558 ntBASIC32.32■■■□□ 2.76
Chmp7Q8R1T1 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
Chmp7Q8R1T1 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
Chmp7Q8R1T1 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Chmp7Q8R1T1 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC32.31■■■□□ 2.76
Chmp7Q8R1T1 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
Chmp7Q8R1T1 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
Chmp7Q8R1T1 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
Chmp7Q8R1T1 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC32.3■■■□□ 2.76
Chmp7Q8R1T1 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
Chmp7Q8R1T1 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Chmp7Q8R1T1 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
Chmp7Q8R1T1 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
Chmp7Q8R1T1 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC32.25■■■□□ 2.75
Chmp7Q8R1T1 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC32.25■■■□□ 2.75
Chmp7Q8R1T1 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Chmp7Q8R1T1 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Chmp7Q8R1T1 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Chmp7Q8R1T1 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Chmp7Q8R1T1 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC32.21■■■□□ 2.75
Chmp7Q8R1T1 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
Chmp7Q8R1T1 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Chmp7Q8R1T1 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC32.17■■■□□ 2.74
Chmp7Q8R1T1 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Chmp7Q8R1T1 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC32.12■■■□□ 2.73
Chmp7Q8R1T1 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Chmp7Q8R1T1 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC32.11■■■□□ 2.73
Chmp7Q8R1T1 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC32.11■■■□□ 2.73
Chmp7Q8R1T1 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Chmp7Q8R1T1 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Chmp7Q8R1T1 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
Chmp7Q8R1T1 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
Chmp7Q8R1T1 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
Chmp7Q8R1T1 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Chmp7Q8R1T1 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
Chmp7Q8R1T1 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Chmp7Q8R1T1 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC32.07■■■□□ 2.72
Chmp7Q8R1T1 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC32.05■■■□□ 2.72
Chmp7Q8R1T1 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
Chmp7Q8R1T1 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
Chmp7Q8R1T1 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC32.03■■■□□ 2.72
Chmp7Q8R1T1 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
Chmp7Q8R1T1 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
Chmp7Q8R1T1 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC32■■■□□ 2.71
Chmp7Q8R1T1 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC32■■■□□ 2.71
Chmp7Q8R1T1 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
Chmp7Q8R1T1 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC31.98■■■□□ 2.71
Chmp7Q8R1T1 Gm7432-201ENSMUST00000210343 879 ntBASIC31.97■■■□□ 2.71
Chmp7Q8R1T1 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Chmp7Q8R1T1 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC31.96■■■□□ 2.71
Chmp7Q8R1T1 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC31.96■■■□□ 2.71
Chmp7Q8R1T1 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
Chmp7Q8R1T1 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC31.95■■■□□ 2.7
Chmp7Q8R1T1 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC31.94■■■□□ 2.7
Chmp7Q8R1T1 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Chmp7Q8R1T1 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC31.94■■■□□ 2.7
Chmp7Q8R1T1 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
Chmp7Q8R1T1 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Chmp7Q8R1T1 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC31.92■■■□□ 2.7
Chmp7Q8R1T1 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC31.92■■■□□ 2.7
Chmp7Q8R1T1 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Chmp7Q8R1T1 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC31.89■■■□□ 2.7
Chmp7Q8R1T1 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
Chmp7Q8R1T1 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Chmp7Q8R1T1 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Chmp7Q8R1T1 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.69
Chmp7Q8R1T1 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Chmp7Q8R1T1 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms