Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Col6a6Q8C6K9 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Col6a6Q8C6K9 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Col6a6Q8C6K9 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC22.96■■□□□ 1.27
Col6a6Q8C6K9 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
Col6a6Q8C6K9 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Col6a6Q8C6K9 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Col6a6Q8C6K9 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC22.94■■□□□ 1.26
Col6a6Q8C6K9 Gm30346-201ENSMUST00000218641 1699 ntBASIC22.94■■□□□ 1.26
Col6a6Q8C6K9 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
Col6a6Q8C6K9 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Col6a6Q8C6K9 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC22.91■■□□□ 1.26
Col6a6Q8C6K9 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Col6a6Q8C6K9 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
Col6a6Q8C6K9 Gm11599-201ENSMUST00000118720 878 ntBASIC22.91■■□□□ 1.26
Col6a6Q8C6K9 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Col6a6Q8C6K9 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC22.89■■□□□ 1.25
Col6a6Q8C6K9 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Col6a6Q8C6K9 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Col6a6Q8C6K9 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Col6a6Q8C6K9 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Col6a6Q8C6K9 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Col6a6Q8C6K9 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Col6a6Q8C6K9 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
Col6a6Q8C6K9 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC22.86■■□□□ 1.25
Col6a6Q8C6K9 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
Col6a6Q8C6K9 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Col6a6Q8C6K9 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC22.83■■□□□ 1.24
Col6a6Q8C6K9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Col6a6Q8C6K9 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC22.82■■□□□ 1.24
Col6a6Q8C6K9 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC22.82■■□□□ 1.24
Col6a6Q8C6K9 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Col6a6Q8C6K9 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Col6a6Q8C6K9 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Col6a6Q8C6K9 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC22.81■■□□□ 1.24
Col6a6Q8C6K9 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Col6a6Q8C6K9 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Col6a6Q8C6K9 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Col6a6Q8C6K9 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Col6a6Q8C6K9 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.8■■□□□ 1.24
Col6a6Q8C6K9 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Col6a6Q8C6K9 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Col6a6Q8C6K9 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Col6a6Q8C6K9 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
Col6a6Q8C6K9 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Col6a6Q8C6K9 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Col6a6Q8C6K9 Nkain2-201ENSMUST00000092602 558 ntBASIC22.77■■□□□ 1.24
Col6a6Q8C6K9 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC22.77■■□□□ 1.24
Col6a6Q8C6K9 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Col6a6Q8C6K9 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
Col6a6Q8C6K9 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Col6a6Q8C6K9 Gm11175-201ENSMUST00000116172 543 ntBASIC22.75■■□□□ 1.23
Col6a6Q8C6K9 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Col6a6Q8C6K9 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Col6a6Q8C6K9 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Col6a6Q8C6K9 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Col6a6Q8C6K9 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22.73■■□□□ 1.23
Col6a6Q8C6K9 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Col6a6Q8C6K9 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Col6a6Q8C6K9 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Col6a6Q8C6K9 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
Col6a6Q8C6K9 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Col6a6Q8C6K9 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC22.69■■□□□ 1.22
Col6a6Q8C6K9 Mir6538-201ENSMUST00000183713 110 ntBASIC22.69■■□□□ 1.22
Col6a6Q8C6K9 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC22.69■■□□□ 1.22
Col6a6Q8C6K9 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Col6a6Q8C6K9 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Col6a6Q8C6K9 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Col6a6Q8C6K9 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Col6a6Q8C6K9 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Col6a6Q8C6K9 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Col6a6Q8C6K9 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Col6a6Q8C6K9 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Col6a6Q8C6K9 Gm2415-204ENSMUST00000190235 2004 ntBASIC22.66■■□□□ 1.22
Col6a6Q8C6K9 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col6a6Q8C6K9 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col6a6Q8C6K9 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Col6a6Q8C6K9 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Col6a6Q8C6K9 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Col6a6Q8C6K9 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Col6a6Q8C6K9 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
Col6a6Q8C6K9 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC22.61■■□□□ 1.21
Col6a6Q8C6K9 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Col6a6Q8C6K9 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC22.61■■□□□ 1.21
Col6a6Q8C6K9 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Col6a6Q8C6K9 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Col6a6Q8C6K9 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Col6a6Q8C6K9 Cap2-205ENSMUST00000225824 1634 ntBASIC22.58■■□□□ 1.2
Col6a6Q8C6K9 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Col6a6Q8C6K9 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Col6a6Q8C6K9 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Col6a6Q8C6K9 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Col6a6Q8C6K9 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Col6a6Q8C6K9 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC22.56■■□□□ 1.2
Col6a6Q8C6K9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC22.55■■□□□ 1.2
Col6a6Q8C6K9 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col6a6Q8C6K9 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col6a6Q8C6K9 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col6a6Q8C6K9 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col6a6Q8C6K9 AC167019.3-201ENSMUST00000228225 1266 ntBASIC22.51■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms