Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.77■■□□□ 1.88
Upf3aQ3ULJ3 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
Upf3aQ3ULJ3 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Upf3aQ3ULJ3 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC26.76■■□□□ 1.87
Upf3aQ3ULJ3 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.75■■□□□ 1.87
Upf3aQ3ULJ3 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Upf3aQ3ULJ3 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
Upf3aQ3ULJ3 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Upf3aQ3ULJ3 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC26.73■■□□□ 1.87
Upf3aQ3ULJ3 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Upf3aQ3ULJ3 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
Upf3aQ3ULJ3 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Upf3aQ3ULJ3 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Upf3aQ3ULJ3 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Upf3aQ3ULJ3 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Upf3aQ3ULJ3 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Upf3aQ3ULJ3 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Upf3aQ3ULJ3 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Upf3aQ3ULJ3 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Upf3aQ3ULJ3 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Upf3aQ3ULJ3 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
Upf3aQ3ULJ3 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC26.65■■□□□ 1.86
Upf3aQ3ULJ3 Nkain2-201ENSMUST00000092602 558 ntBASIC26.65■■□□□ 1.86
Upf3aQ3ULJ3 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Upf3aQ3ULJ3 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Upf3aQ3ULJ3 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.85
Upf3aQ3ULJ3 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Upf3aQ3ULJ3 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Upf3aQ3ULJ3 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
Upf3aQ3ULJ3 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Upf3aQ3ULJ3 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
Upf3aQ3ULJ3 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Upf3aQ3ULJ3 Gm6658-202ENSMUST00000209493 1885 ntBASIC26.58■■□□□ 1.85
Upf3aQ3ULJ3 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Upf3aQ3ULJ3 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Upf3aQ3ULJ3 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC26.58■■□□□ 1.85
Upf3aQ3ULJ3 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC26.58■■□□□ 1.85
Upf3aQ3ULJ3 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Upf3aQ3ULJ3 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Upf3aQ3ULJ3 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Upf3aQ3ULJ3 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
Upf3aQ3ULJ3 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Upf3aQ3ULJ3 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Upf3aQ3ULJ3 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Upf3aQ3ULJ3 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Upf3aQ3ULJ3 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Upf3aQ3ULJ3 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Upf3aQ3ULJ3 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC26.52■■□□□ 1.84
Upf3aQ3ULJ3 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC26.52■■□□□ 1.84
Upf3aQ3ULJ3 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Upf3aQ3ULJ3 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Upf3aQ3ULJ3 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Upf3aQ3ULJ3 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Upf3aQ3ULJ3 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Upf3aQ3ULJ3 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC26.47■■□□□ 1.83
Upf3aQ3ULJ3 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Upf3aQ3ULJ3 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Upf3aQ3ULJ3 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
Upf3aQ3ULJ3 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC26.45■■□□□ 1.82
Upf3aQ3ULJ3 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Upf3aQ3ULJ3 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Upf3aQ3ULJ3 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Upf3aQ3ULJ3 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
Upf3aQ3ULJ3 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC26.42■■□□□ 1.82
Upf3aQ3ULJ3 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC26.42■■□□□ 1.82
Upf3aQ3ULJ3 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Upf3aQ3ULJ3 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Upf3aQ3ULJ3 Gm7432-201ENSMUST00000210343 879 ntBASIC26.41■■□□□ 1.82
Upf3aQ3ULJ3 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC26.4■■□□□ 1.82
Upf3aQ3ULJ3 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Upf3aQ3ULJ3 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Upf3aQ3ULJ3 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Upf3aQ3ULJ3 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
Upf3aQ3ULJ3 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Upf3aQ3ULJ3 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC26.35■■□□□ 1.81
Upf3aQ3ULJ3 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Upf3aQ3ULJ3 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC26.32■■□□□ 1.8
Upf3aQ3ULJ3 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Upf3aQ3ULJ3 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Upf3aQ3ULJ3 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Upf3aQ3ULJ3 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC26.31■■□□□ 1.8
Upf3aQ3ULJ3 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Upf3aQ3ULJ3 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Upf3aQ3ULJ3 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
Upf3aQ3ULJ3 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Upf3aQ3ULJ3 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Upf3aQ3ULJ3 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Upf3aQ3ULJ3 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Upf3aQ3ULJ3 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Upf3aQ3ULJ3 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Upf3aQ3ULJ3 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
Upf3aQ3ULJ3 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC26.22■■□□□ 1.79
Upf3aQ3ULJ3 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Upf3aQ3ULJ3 Gm11599-201ENSMUST00000118720 878 ntBASIC26.21■■□□□ 1.79
Upf3aQ3ULJ3 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
Upf3aQ3ULJ3 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.19■■□□□ 1.78
Upf3aQ3ULJ3 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.18■■□□□ 1.78
Upf3aQ3ULJ3 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC26.17■■□□□ 1.78
Upf3aQ3ULJ3 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC26.16■■□□□ 1.78
Upf3aQ3ULJ3 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms