Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Gm8503-201ENSMUST00000118131 455 ntBASIC30.75■■■□□ 2.51
Ube4aE9Q735 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
Ube4aE9Q735 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Ube4aE9Q735 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
Ube4aE9Q735 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Ube4aE9Q735 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
Ube4aE9Q735 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Ube4aE9Q735 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
Ube4aE9Q735 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ube4aE9Q735 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ube4aE9Q735 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Ube4aE9Q735 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC30.65■■■□□ 2.5
Ube4aE9Q735 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ube4aE9Q735 Gm6821-201ENSMUST00000107540 542 ntBASIC30.65■■■□□ 2.5
Ube4aE9Q735 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ube4aE9Q735 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Ube4aE9Q735 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Ube4aE9Q735 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC30.63■■■□□ 2.49
Ube4aE9Q735 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Ube4aE9Q735 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Ube4aE9Q735 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Ube4aE9Q735 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Ube4aE9Q735 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC30.59■■■□□ 2.49
Ube4aE9Q735 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
Ube4aE9Q735 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC30.59■■■□□ 2.49
Ube4aE9Q735 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC30.58■■■□□ 2.49
Ube4aE9Q735 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC30.57■■■□□ 2.48
Ube4aE9Q735 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Ube4aE9Q735 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ube4aE9Q735 Gm42809-201ENSMUST00000198429 1138 ntBASIC30.56■■■□□ 2.48
Ube4aE9Q735 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ube4aE9Q735 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC30.56■■■□□ 2.48
Ube4aE9Q735 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Ube4aE9Q735 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ube4aE9Q735 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Ube4aE9Q735 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
Ube4aE9Q735 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Ube4aE9Q735 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC30.5■■■□□ 2.47
Ube4aE9Q735 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Ube4aE9Q735 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Ube4aE9Q735 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Ube4aE9Q735 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
Ube4aE9Q735 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Ube4aE9Q735 Gm5987-201ENSMUST00000196433 1151 ntBASIC30.44■■■□□ 2.46
Ube4aE9Q735 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Ube4aE9Q735 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Ube4aE9Q735 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Ube4aE9Q735 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Ube4aE9Q735 Nkain2-201ENSMUST00000092602 558 ntBASIC30.4■■■□□ 2.46
Ube4aE9Q735 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Ube4aE9Q735 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC30.38■■■□□ 2.45
Ube4aE9Q735 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC30.38■■■□□ 2.45
Ube4aE9Q735 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Ube4aE9Q735 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ube4aE9Q735 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Ube4aE9Q735 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
Ube4aE9Q735 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Ube4aE9Q735 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
Ube4aE9Q735 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC30.35■■■□□ 2.45
Ube4aE9Q735 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC30.34■■■□□ 2.45
Ube4aE9Q735 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Ube4aE9Q735 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
Ube4aE9Q735 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC30.34■■■□□ 2.45
Ube4aE9Q735 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
Ube4aE9Q735 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC30.33■■■□□ 2.45
Ube4aE9Q735 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Ube4aE9Q735 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
Ube4aE9Q735 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC30.31■■■□□ 2.44
Ube4aE9Q735 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Ube4aE9Q735 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Ube4aE9Q735 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Ube4aE9Q735 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC30.29■■■□□ 2.44
Ube4aE9Q735 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
Ube4aE9Q735 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC30.28■■■□□ 2.44
Ube4aE9Q735 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Ube4aE9Q735 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Ube4aE9Q735 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.26■■■□□ 2.43
Ube4aE9Q735 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Ube4aE9Q735 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
Ube4aE9Q735 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Ube4aE9Q735 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Ube4aE9Q735 Gm6345-201ENSMUST00000180378 1691 ntBASIC30.23■■■□□ 2.43
Ube4aE9Q735 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Ube4aE9Q735 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Ube4aE9Q735 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC30.17■■■□□ 2.42
Ube4aE9Q735 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Ube4aE9Q735 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Ube4aE9Q735 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC30.14■■■□□ 2.42
Ube4aE9Q735 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
Ube4aE9Q735 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Ube4aE9Q735 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Ube4aE9Q735 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Ube4aE9Q735 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30.12■■■□□ 2.41
Ube4aE9Q735 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC30.11■■■□□ 2.41
Ube4aE9Q735 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC30.11■■■□□ 2.41
Ube4aE9Q735 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
Ube4aE9Q735 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Ube4aE9Q735 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Ube4aE9Q735 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Ube4aE9Q735 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 10.5 ms