Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.96■□□□□ 0.79
SCN3AQ9NY46 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 DUX4L16-201ENST00000555130 1264 ntBASIC19.96■□□□□ 0.79
SCN3AQ9NY46 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 AC244015.2-201ENST00000616358 1861 ntBASIC19.96■□□□□ 0.79
SCN3AQ9NY46 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 CNN2P6-201ENST00000439038 900 ntBASIC19.95■□□□□ 0.78
SCN3AQ9NY46 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 MFSD11-216ENST00000590393 1141 ntBASIC19.95■□□□□ 0.78
SCN3AQ9NY46 AP001160.3-201ENST00000601484 763 ntBASIC19.95■□□□□ 0.78
SCN3AQ9NY46 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 AC053503.5-201ENST00000601508 636 ntBASIC19.95■□□□□ 0.78
SCN3AQ9NY46 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SCN3AQ9NY46 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 POU5F1P4-201ENST00000413175 1085 ntBASIC19.94■□□□□ 0.78
SCN3AQ9NY46 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 AC007375.3-201ENST00000600936 2314 ntBASIC19.94■□□□□ 0.78
SCN3AQ9NY46 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
SCN3AQ9NY46 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 KRT18P11-201ENST00000435214 1283 ntBASIC19.93■□□□□ 0.78
SCN3AQ9NY46 AC090192.1-201ENST00000517740 490 ntBASIC19.93■□□□□ 0.78
SCN3AQ9NY46 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.93■□□□□ 0.78
SCN3AQ9NY46 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SCN3AQ9NY46 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 AL137784.2-201ENST00000607332 1000 ntBASIC19.92■□□□□ 0.78
SCN3AQ9NY46 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
SCN3AQ9NY46 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms